PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g007550.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 391aa    MW: 44012.3 Da    PI: 7.092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g007550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-5251331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLp + ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Solyc05g007550.1.1   5 MLPGFRFHPTDEELVGFYLRRKVQQKPISI-ELIKQLDIYKYDPWDLPtELAAVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 94 
                         579***************************.89***************545556999********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Solyc05g007550.1.1  95 PIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 133
                         ****956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-574164IPR003441NAC domain
PROSITE profilePS5100557.2445164IPR003441NAC domain
PfamPF023651.3E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDEVMLPGFR FHPTDEELVG FYLRRKVQQK PISIELIKQL DIYKYDPWDL PTELAAVGEK  60
EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE GSKCIGLKKS LVFYKGRAAK  120
GIKTDWMMHE FRLPSITDSN APKRFLDKHI PPNDSWAICR IFKKANSNAH RALSHSWVSP  180
PQLLPQNNTT SHDFLTSSHF TNNSNEMSSF IHKTTSTTSP IQFNDLLQNS SNNNMSSTFT  240
TLDLPLYKTL NSLSNHNNDP ITSYTFSSSC VDNMNNIDAS SLLLNMSSSI FGDYSIALPE  300
NIEGGGGGGV HDDTTTTTLK EANNVIINNM EHMEELQWGN VVRSNNIGLM NNFPLNMAAD  360
AWKTNLLWDS SSPCPSSEMS TSYSTNKCYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-54716719168NO APICAL MERISTEM PROTEIN
1ut4_B4e-54716719168NO APICAL MERISTEM PROTEIN
1ut7_A4e-54716719168NO APICAL MERISTEM PROTEIN
1ut7_B4e-54716719168NO APICAL MERISTEM PROTEIN
4dul_A4e-54716719168NAC domain-containing protein 19
4dul_B4e-54716719168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g007550.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095890.0Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0145P19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238798.20.0putative NAC domain-containing protein 94 isoform X1
SwissprotQ9ZVH01e-102FEZ_ARATH; Protein FEZ
TrEMBLA0A3Q7H5W50.0A0A3Q7H5W5_SOLLC; Uncharacterized protein
STRINGSolyc05g007550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-104NAC family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]