PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g007110.2.1

Common Name

LOC101257373

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 393aa MW: 44413.7 Da PI: 8.7729

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g007110.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2e-30	186	245	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+++d++++++tYeg+Hnh+ Solyc05g007110.2.1 186 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCSKDTSILTTTYEGTHNHP 245 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.4E-31	171	247	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	179	247	IPR003657	WRKY domain
PROSITE profile	PS50811	28.265	181	247	IPR003657	WRKY domain
SMART	SM00774	2.2E-35	186	246	IPR003657	WRKY domain
Pfam	PF03106	8.1E-27	187	245	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MLRKDRAMDS TKKDEDKLNS TKCEIYEAKE ENERLKRMLS KMMNDYKSLE MYFQGILTQK 60 NTKNIIATSN NIHEEKEQVE LVSLSLGRNS STSRELIKKE LLYDDQNKSN KNHSKLLFDG 120 LELGLGCKFT QENSFEGPKK ENINNERRVL IQNYLPSDYC GEEFLQQIPQ KKARVSIRAV 180 CDTITMNDGC QWRKYGQKIA KGNPCPRAYY RCTVSPSCPV RKQVQRCSKD TSILTTTYEG 240 THNHPLPFSA TDMASTTSAA ASMLRCTSTS STSQQFLPNI DQNLHGKINF TNNTSNNNLL 300 LATHNNSPTF YLPKTSISTS QSHPTITLDF TTNSSSTNSS SSNSYSTLCN NIKSEIGPSS 360 YLGRPCYSNQ PYITSKEQSE HDRSVQCRSQ NF*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MLRKDRAMDS TKKDEDKLNS TKCEIYEAKE ENERLKRMLS KMMNDYKSLE MYFQGILTQK  60
NTKNIIATSN NIHEEKEQVE LVSLSLGRNS STSRELIKKE LLYDDQNKSN KNHSKLLFDG  120
LELGLGCKFT QENSFEGPKK ENINNERRVL IQNYLPSDYC GEEFLQQIPQ KKARVSIRAV  180
CDTITMNDGC QWRKYGQKIA KGNPCPRAYY RCTVSPSCPV RKQVQRCSKD TSILTTTYEG  240
THNHPLPFSA TDMASTTSAA ASMLRCTSTS STSQQFLPNI DQNLHGKINF TNNTSNNNLL  300
LATHNNSPTF YLPKTSISTS QSHPTITLDF TTNSSSTNSS SSNSYSTLCN NIKSEIGPSS  360
YLGRPCYSNQ PYITSKEQSE HDRSVQCRSQ NF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	186	247	14	74	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g007110.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC194694	0.0	Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0058L13, complete sequence
GenBank	AC212301	0.0	Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0060G21, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010320666.1	0.0	probable WRKY transcription factor 72
TrEMBL	K4BWN7	0.0	K4BWN7_SOLLC; Uncharacterized protein
STRING	Solyc05g007110.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-55	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Solyc05g007110.2.1
Entrez Gene	101257373

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]