PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g005300.2.1
Common NameLOC101245546
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 483aa    MW: 54013.3 Da    PI: 6.0837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g005300.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13303346755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+ri++++++Lr l+P+      +K++K++iL   ++YI++Lq
  Solyc05g005300.2.1 303 VTERKRRNRIKDGLFTLRALVPNI-----TKMDKVAILGDSIDYINELQ 346
                         57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-198156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.205296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16298363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-13298350No hitNo description
SMARTSM003531.4E-14302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16303364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10304346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEKALEWLRP LVDSKNWEYC VVWKFGDDPS RFIEWMGCCC SGANGVDVNV KRENGGKQTF  60
SSLCRDIQVQ HPIRTKACEA LAHFPHSISL YSGIQAEVVT SNEPKWINHA EISNSNLSHE  120
LKGTLVLIPV AGGLVELYNS KMIYKDQKTI NFIINRFKLG SEEANSSVAQ KEDQVLDFFP  180
YEKSNFCAPL LQYATSFPSS APHISQVSES SANPSIQGSS TGSIPSNELT LCHSPPDHLS  240
RNVPLSQSTE GYFEHTELQC SGNLSRMEDT IFPWKQENYI VAGDMFSMGK KRQKGPYQSK  300
NLVTERKRRN RIKDGLFTLR ALVPNITKMD KVAILGDSID YINELQEKVK LYKIELNKIE  360
AEVTNNESTP EMVLSDMTEM SKVTGQTNEK TQISVNTTDR TRMEVEVNQI GAREFLLKVS  420
GSRKPGGFTQ LMEAMNYLGL ELVNVSCTTS GGEIVSVYIV EANVDRFIDA QKLRSSLIEL  480
TS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294GKKRQKG
2289308KKRQKGPYQSKNLVTERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g005300.2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1887810.0Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320569.10.0transcription factor bHLH90 isoform X1
TrEMBLK4BW610.0K4BW61_SOLLC; Uncharacterized protein
STRINGSolyc05g005300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.17e-53bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]