PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g082480.2.1

Common Name

LOC101260431

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 913aa MW: 102468 Da PI: 5.6947

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g082480.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.3	8.2e-30	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Solyc04g082480.2.1 588 AEKTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.518	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.23E-23	803	896	No hit	No description
PROSITE profile	PS51745	24.928	811	895	IPR000270	PB1 domain
SMART	SM00666	9.2E-24	811	894	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.2E-21	812	890	No hit	No description
CDD	cd06407	2.37E-39	813	894	No hit	No description
Pfam	PF00564	1.8E-18	813	893	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MDERVIPSNP LLTTPSDYLM DLDYMDGLFL EGCWLETTDG NEFLQHSPGI FNAPFDSSFM 60 WPTTIDANNV EFNGISSKDA QQEKQRPSLT ENLSINHCQE LNYAKVQSFG ENMNNAMCTS 120 SLSENHLVEA HELNKRWWIG PKASSSVMDR LIWALGYIRD CSRDKDILLQ LWVPINRDGR 180 RVLSTTNQPF LLDLNCPQLA NYREVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR 240 FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR SELESVCKAL 300 EAVDLSTSEV STTQDAKVCD LSYQAALPEV LEVLKSACET HGLPLAQTWV PCIQQGKGGC 360 RHSQENLIHC VSTEDSACYV ADPRVQGFHD ACSEHHLLKG QGVVGRAFNT NQPCFSADLT 420 SYSKSEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSDCRNPE DHRKMLTSLS 480 IIIQNVCRTL RVVTDKELQE ETISVGEMAN HTVEQHKEHT ETSQERTSWT SCDAEFQESS 540 VMSTFQDEKP DEMLRKDSVE FRHRKNSAYE EGVSRNLGKT GDRRRAKAEK TITLQVLQQY 600 FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIQRVI DSVQGASGTL 660 QIESFYSNFP ELASPNASRM SPFADSKSNE HPTALNTQQE RCITSPNPDA SKSPSSSSSR 720 SSSSSQCCSS GTKPQSPQSH PLSIVGDEDL IVQEESVDNA VKRVKSEPEL HLSSEALKTI 780 PRSQSHLCVA ENPISENLVL KRSPSTSQEE APRVKVTHGE EKIRFRMQNS WRYNDLLREI 840 TRRFGIDDPS GLQLKYLDDD SEWVLLTCDA DLEECIDVCM SSQIQMIKLI LVQDSQHHFG 900 SSFGSSSPIL VQ*

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MDERVIPSNP LLTTPSDYLM DLDYMDGLFL EGCWLETTDG NEFLQHSPGI FNAPFDSSFM  60
WPTTIDANNV EFNGISSKDA QQEKQRPSLT ENLSINHCQE LNYAKVQSFG ENMNNAMCTS  120
SLSENHLVEA HELNKRWWIG PKASSSVMDR LIWALGYIRD CSRDKDILLQ LWVPINRDGR  180
RVLSTTNQPF LLDLNCPQLA NYREVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR  240
FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR SELESVCKAL  300
EAVDLSTSEV STTQDAKVCD LSYQAALPEV LEVLKSACET HGLPLAQTWV PCIQQGKGGC  360
RHSQENLIHC VSTEDSACYV ADPRVQGFHD ACSEHHLLKG QGVVGRAFNT NQPCFSADLT  420
SYSKSEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSDCRNPE DHRKMLTSLS  480
IIIQNVCRTL RVVTDKELQE ETISVGEMAN HTVEQHKEHT ETSQERTSWT SCDAEFQESS  540
VMSTFQDEKP DEMLRKDSVE FRHRKNSAYE EGVSRNLGKT GDRRRAKAEK TITLQVLQQY  600
FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIQRVI DSVQGASGTL  660
QIESFYSNFP ELASPNASRM SPFADSKSNE HPTALNTQQE RCITSPNPDA SKSPSSSSSR  720
SSSSSQCCSS GTKPQSPQSH PLSIVGDEDL IVQEESVDNA VKRVKSEPEL HLSSEALKTI  780
PRSQSHLCVA ENPISENLVL KRSPSTSQEE APRVKVTHGE EKIRFRMQNS WRYNDLLREI  840
TRRFGIDDPS GLQLKYLDDD SEWVLLTCDA DLEECIDVCM SSQIQMIKLI LVQDSQHHFG  900
SSFGSSSPIL VQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8186	0.0	callus\| flower

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g082480.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU326379	0.0	S.lycopersicum DNA sequence from clone LE_HBa-68N5 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238434.1	0.0	protein NLP4 isoform X1
Refseq	XP_010320461.1	0.0	protein NLP4 isoform X1
Refseq	XP_010320463.1	0.0	protein NLP4 isoform X1
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A3Q7GB40	0.0	A0A3Q7GB40_SOLLC; Uncharacterized protein
STRING	Solyc04g082480.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Solyc04g082480.2.1
Entrez Gene	101260431

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]