PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g081190.2.1 | ||||||||
Common Name | vsf-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 445aa MW: 48278.1 Da PI: 9.5749 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 299 | 350 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 kr++r NR++A rs +RK +i eLe kv++L++e ++L ++ l+k+ Solyc04g081190.2.1 299 KRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNF 350 9*****************************************9998888865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-13 | 295 | 359 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.875 | 297 | 360 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.53E-11 | 299 | 353 | No hit | No description |
Pfam | PF00170 | 2.5E-9 | 299 | 350 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-11 | 299 | 351 | No hit | No description |
CDD | cd14703 | 1.50E-19 | 300 | 349 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MAQSNSKPPM SSQNFGVGAV SHVRSLSQSS IFSNSCLPPL SPFPPSEPGM VSGHSSLKDI 60 SMEEADVNSQ GVGVVSSFTR DGLPPRKGHR RSNSDVPLGF SAMIQSSPQL MPISGQKVLG 120 RAVSLGDSNG KIDERKPKGE VTDELLFSYM NLENIETLNG SGTKDRDKDS IVSGTKVTGS 180 ESSNNEAESV MKGNNVSIQP TNLREGTKRS ADANIAPAAR HFRSLSMDSA IGNFHYGDES 240 PNLPTSLMMR SGQLSPSNSG NESSSKHNLD FGNSEFSEAE MKKIMADERL AEIAVLDPKR 300 AKRILANRLS AARSKERKTR YISELEHKVQ KLQTETTTLS TQVTILQKNF VEISSLNSEL 360 KFRIQAMEQQ AQLRDALHEA LTAEVQRLKL AAGEHREEGR LPNNMTQQTP VKHNIFQMQR 420 QQPSQMQQLS VGKASAASAT PASA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.3643 | 0.0 | flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g081190.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X73635 | 0.0 | L.esculentum vsf-1 mRNA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234548.2 | 0.0 | transcription factor VSF-1 | ||||
TrEMBL | O81998 | 0.0 | O81998_SOLLC; Transcription factor VSF-1 | ||||
STRING | Solyc04g081190.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1265 | 24 | 78 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 5e-74 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g081190.2.1 |
Entrez Gene | 544192 |
Publications ? help Back to Top | |||
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