PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g080970.2.1
Common NameLOC101250986
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SRS
Protein Properties Length: 373aa    MW: 39921.9 Da    PI: 8.4205
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g080970.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.93.2e-691402963153
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqs 84 
                          g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer qql+a ++++++++         +++ +kr+re+   ++s
  Solyc04g080970.2.1 140 GGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCNTHVKSTWVPAAKRRERLQQLTAIQQNQQQQTqllslradhHSNIPKRPREN--PSSS 228
                         5789**********************************************99999999888887789999988777888888886..7889 PP

              DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         +l++t++++  s  el  + +P+evss+avfrcv+vs++dd+++++aY+tav+igGh+fkGiLydqG+e
  Solyc04g080970.2.1 229 SLACTRIPNILSGLELGGH-FPSEVSSQAVFRCVKVSAIDDADDQYAYHTAVNIGGHLFKGILYDQGVE 296
                         9*********999888876.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-67142296IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.3E-26144186IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.1E-27247295IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGGNKSQP QQEQDQLATN SLLLFKDDEI YNKGFELWQQ YYQLHQQRAH  60
PPHHQAQDVD FSVGVGPSCN RRIISTGSSS SSGGNNNIVG GGTDDHHHHQ NITNHYTNSS  120
SYRSSSGFRV MRPSSSGGAG GGINCQDCGN QAKKDCSHLR CRTCCKSRGF QCNTHVKSTW  180
VPAAKRRERL QQLTAIQQNQ QQQTQLLSLR ADHHSNIPKR PRENPSSSSL ACTRIPNILS  240
GLELGGHFPS EVSSQAVFRC VKVSAIDDAD DQYAYHTAVN IGGHLFKGIL YDQGVEGRYS  300
GGVGGGGESS SGSGAAQQAL NFITGATTST TTAVATTSHQ HQPAVTMYDP SVYPTPITAF  360
LAGTQFFPPP RP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g080970.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238315.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3Q7G7S00.0A0A3Q7G7S0_SOLLC; Uncharacterized protein
STRINGSolyc04g080970.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-65Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]