PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g080490.2.1

Common Name

LOC101268680

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 291aa MW: 31547.3 Da PI: 8.6229

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g080490.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.1	1.8e-32	58	112	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e + Solyc04g080490.2.1 58 GRYRECLKNHAANIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKEIPN 112 69***********************9.999******************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.3E-30	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.8E-31	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-22	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.715	60	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-28	215	277	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-16	215	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.3E-28	219	276	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MALGGGNEEK EMRISGFQNI DLVSPGGAAP DDIVSAAPHN NSTTGSNKLN KGTSTVRGRY 60 RECLKNHAAN IGGNVTDGCG EFMPSGEEGT LEALKCAACN CHRNFHRKEI PNNVGAGVGG 120 GVGGDNNNNA GIMVVHPLQL PQPLPSPIPS LNHHHHHHHQ HGGRSIWTTM PPQPVKMAFG 180 GSGGGSGATD SSSEELNFNT YHHQQATSVP PQQPFMLAKK RFRTKFSQEQ KEKMLEFAEK 240 LGWRIPREDD AEVQRFCSQV GVKRQVFKVW MHNNKNPSSA KKNIIQEDQP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-25	220	279	18	79	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g080490.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU457811	0.0	S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence
GenBank	CU468239	0.0	S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238289.1	0.0	zinc-finger homeodomain protein 5
Swissprot	Q9FRL5	3e-58	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A3Q7GAZ1	0.0	A0A3Q7GAZ1_SOLLC; Uncharacterized protein
STRING	Solyc04g080490.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	3e-55	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Solyc04g080490.2.1
Entrez Gene	101268680

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]