PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g080130.2.1 | ||||||||
Common Name | LOC101254481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 502aa MW: 54293 Da PI: 8.1004 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Solyc04g080130.2.1 49 FVCEICNKGFQRDQNLQLHRRGH 71 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Solyc04g080130.2.1 125 FKCERCTKKYAVHSDWKAHMKTC 147 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.13E-7 | 48 | 71 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 48 | 71 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 49 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.0E-5 | 49 | 71 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 90 | 120 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 113 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.13E-7 | 120 | 146 | No hit | No description |
SMART | SM00355 | 73 | 125 | 145 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MAEIEKSAEE SIIQQNFPVK RKRNLPGNPD PEAEVIALSP RTLMATNRFV CEICNKGFQR 60 DQNLQLHRRG HNLPWKLRQR TSNEVKKRVY VCPESSCVHH DPSRALGDLT GIKKHFCRKH 120 GEKKFKCERC TKKYAVHSDW KAHMKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES 180 ARSHQPLMED TNAEGDLKVD EAINKTVSSS SSPPPQPLTP STSVLSPVLS IQSSELPVEY 240 QNQGGVQIQQ AQGTTTPVST TPVITISTAA ASGPSSSKVF ASVFPSSSSA QHVNSSYSDI 300 LRAIETEQVM AVEPISLSLS SSLYLSNNRA SLFQEHTGGH GHGHGQHYGS ATMQPALSAT 360 ALLQKAAQMG STTSNNSFLR GLGLAMSPST STPEENSLAR RTNALGHVKL ESNINAEVPG 420 LGIQLHGHSG FTDLMMGPSI SHQTSMMFGS KPPTLDFLGL GNGASGTPSN GFSAFLSSME 480 DGFGVVAEPW DDPSDRKPAM L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-33 | 121 | 182 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 8e-33 | 121 | 182 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2296 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g080130.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013478 | 0.0 | Lycopersicon esculentum clone 132154R, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238241.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 1e-133 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A3Q7G9T0 | 0.0 | A0A3Q7G9T0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g080130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-112 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g080130.2.1 |
Entrez Gene | 101254481 |
Publications ? help Back to Top | |||
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