PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g079830.2.1

Common Name

LOC101247316

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 693aa MW: 77998.9 Da PI: 6.9707

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g079830.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	492	529	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps++++ L++++gL+++qV++WF N R + Solyc04g079830.2.1 492 FEHflHPYPSEADKHLLSRQTGLSKNQVSNWFINARVR 529 554459******************************88 PP
2	BELL	111.4	5e-36	352	423	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e q++k kLls+l+eVd rY +y+eq+q++++sF+ v+g+g+a+pYt+lA+ka+SrhFrc+kdai++q+ Solyc04g079830.2.1 352 ERSEYQRRKIKLLSMLDEVDARYTRYCEQMQAMVNSFDSVIGYGAAAPYTALAQKAMSRHFRCIKDAIVGQL 423 789******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-55	284	421	IPR006563	POX domain
Pfam	PF07526	1.6E-48	290	420	IPR006563	POX domain
PROSITE profile	PS50071	12.422	470	533	IPR001356	Homeobox domain
CDD	cd00086	1.04E-11	473	534	No hit	No description
SMART	SM00389	1.8E-9	473	537	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	474	540	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	476	539	IPR009057	Homeodomain-like
Pfam	PF05920	7.6E-18	490	529	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MSHSFHQQQG FYNFSNVYER SATTTTKHED MLRVQGFEPQ QVEVAAADVE PPPTATVYDD 60 GGMLTEIISY PSAWRKTATE ILDDQIQSSN YRSWPQKEQQ HLQQQQQQLL PQSIINDTEL 120 PLMNPHIKPS SPPRSSSSLH MLLPNSVDTN NLLHHQGFHL LNPAPVETPS QFTWIPGSSS 180 GEDNSARIGR VVDGQGLSLS LSRNFEAAAK LEDLRIGNGE IYLHNNQGLL GPINNNNHHH 240 HHHQLLHSGV IMDHRTPPHP HPLPPHSSTG HHHQIHVGYA ASSPRISNAL RNSRYVKATQ 300 ELLEEFCCVG RGNFKNQRVK KLDDDQNPNS NSESEDHRGP SKDNHPPLSA AERSEYQRRK 360 IKLLSMLDEV DARYTRYCEQ MQAMVNSFDS VIGYGAAAPY TALAQKAMSR HFRCIKDAIV 420 GQLKQTCKYL GEKDVTGTSG LTKGETPRLK MLDQKLRQQK ALHQMGMLDS DAWRPQRGLP 480 ERSVNVLRAW LFEHFLHPYP SEADKHLLSR QTGLSKNQVS NWFINARVRL WKPMVEEMYQ 540 QETKEAETDQ EEEEQEQQQQ EKQAQIPMHN MATSPAAATT KTTTMSLSSS VRSKLNANER 600 DPSENIINYR QYALGNQLVM LQSDDTTTAS TSTHHYFTAV NAVDLVADPN AVNTAAFGSQ 660 QAGDVSLTLG LRHSENVPRK PAQFQLRDFG AY*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MSHSFHQQQG FYNFSNVYER SATTTTKHED MLRVQGFEPQ QVEVAAADVE PPPTATVYDD  60
GGMLTEIISY PSAWRKTATE ILDDQIQSSN YRSWPQKEQQ HLQQQQQQLL PQSIINDTEL  120
PLMNPHIKPS SPPRSSSSLH MLLPNSVDTN NLLHHQGFHL LNPAPVETPS QFTWIPGSSS  180
GEDNSARIGR VVDGQGLSLS LSRNFEAAAK LEDLRIGNGE IYLHNNQGLL GPINNNNHHH  240
HHHQLLHSGV IMDHRTPPHP HPLPPHSSTG HHHQIHVGYA ASSPRISNAL RNSRYVKATQ  300
ELLEEFCCVG RGNFKNQRVK KLDDDQNPNS NSESEDHRGP SKDNHPPLSA AERSEYQRRK  360
IKLLSMLDEV DARYTRYCEQ MQAMVNSFDS VIGYGAAAPY TALAQKAMSR HFRCIKDAIV  420
GQLKQTCKYL GEKDVTGTSG LTKGETPRLK MLDQKLRQQK ALHQMGMLDS DAWRPQRGLP  480
ERSVNVLRAW LFEHFLHPYP SEADKHLLSR QTGLSKNQVS NWFINARVRL WKPMVEEMYQ  540
QETKEAETDQ EEEEQEQQQQ EKQAQIPMHN MATSPAAATT KTTTMSLSSS VRSKLNANER  600
DPSENIINYR QYALGNQLVM LQSDDTTTAS TSTHHYFTAV NAVDLVADPN AVNTAAFGSQ  660
QAGDVSLTLG LRHSENVPRK PAQFQLRDFG AY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	479	537	5	63	Homeobox protein Meis2
3k2a_B	3e-16	479	537	5	63	Homeobox protein Meis2
4xrm_A	3e-16	479	537	5	63	Homeobox protein Meis2
4xrm_B	3e-16	479	537	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.17419	0.0	flower\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g079830.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU459025	0.0	S.lycopersicum DNA sequence from clone LE_HBa-223O22 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238216.1	0.0	BEL1-like homeodomain protein 4
TrEMBL	A0A2G2X0S6	0.0	A0A2G2X0S6_CAPBA; Homeobox protein BEL1-like protein
STRING	Solyc04g079830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-124	BEL1-like homeodomain 2

Link Out ? help Back to Top
Phytozome	Solyc04g079830.2.1
Entrez Gene	101247316

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]