PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g079590.2.1
Common NameLOC101267401
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 581aa    MW: 64256 Da    PI: 7.3102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g079590.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.8e-1917991199
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        ++s  l +p kf+++++g    s t +l  +sg+ W v l   +++++ ++ +GW +Fvk++ L++gD++vF++dg+  f  +v+vf++
  Solyc04g079590.2.1 17 MNSEKLKIPSKFIKHMEGG--DSGTTVLVGPSGNAWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDGDLHF--TVQVFDE 99
                        566789*******777544..3458999************..99999***************************997777..9999986 PP
2B353.83.6e-17249343198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f kv+++ + + s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e 
  Solyc04g079590.2.1 249 FTKVMKRFNISGSYTLHIPYQFATEHL--PNCKVKILLHNLEGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDTCIFELVRKCE- 336
                         677777777788889***********6..45999****************77566666699***********************998544. PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                          l+v+v++
  Solyc04g079590.2.1 337 -LRVRVLK 343
                         .5787776 PP
3B345.21.7e-144735541397
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g+   e++v+v+
  Solyc04g079590.2.1 473 SYTLKVPCRFSMEHL--PNCRTEIVLQNLKGECWTVNSIPTVKVQTlHTFCGGWSAFVRENDIQMGDICIFELIGK--YEMRVHVC 554
                         556889999988886..45889****************99888888999************************995..44567666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-233101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.2977100IPR003340B3 DNA binding domain
SMARTSM010194.0E-119100IPR003340B3 DNA binding domain
PfamPF023628.0E-171699IPR003340B3 DNA binding domain
CDDcd100171.55E-181798No hitNo description
SuperFamilySSF1019364.71E-24242343IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-23244345IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-20247343No hitNo description
PROSITE profilePS5086313.93249345IPR003340B3 DNA binding domain
SMARTSM010192.1E-16249345IPR003340B3 DNA binding domain
PfamPF023621.0E-14249342IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-23456556IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-22456554IPR015300DNA-binding pseudobarrel domain
CDDcd100175.12E-19459554No hitNo description
PROSITE profilePS5086312.28461557IPR003340B3 DNA binding domain
SMARTSM010197.9E-9461559IPR003340B3 DNA binding domain
PfamPF023621.0E-11465554IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MLDARRPHFL VGFNPFMNSE KLKIPSKFIK HMEGGDSGTT VLVGPSGNAW PVDLIQQDDG  60
LFFNNGWVSF VKDHCLETGD SLVFRYDGDL HFTVQVFDES SCEKEASYNA DCSQGATDLY  120
NLALKKRDRG NSVLLDCMVE GVPKKMKSTE IPSECTSSQD THGLASSKDG YTPEDAVCSY  180
AGRNYAASFL DEMENAGDAL NSKVTIAVPA QAKIIFSNPG NASSEKDMWL PAQEAEKVAG  240
LFTSSLPSFT KVMKRFNISG SYTLHIPYQF ATEHLPNCKV KILLHNLEGK TWTVNSIPTT  300
RVQTSHTFCG GWLSFVRDNN IDLGDTCIFE LVRKCELRVR VLKAEKEGSD YSSKVVDEGL  360
VIDYAKNSGC KSRKVGSSSD QAKVMTYDKK GSTPEKEKHG DMLKNHQLHS QSKISSGDSA  420
IRKPTSSQDK QGSFTKSCMS MKSVPEEKLA AESFISNFPH FVRIMKKFNI SGSYTLKVPC  480
RFSMEHLPNC RTEIVLQNLK GECWTVNSIP TVKVQTLHTF CGGWSAFVRE NDIQMGDICI  540
FELIGKYEMR VHVCAIGKKG LDYQNGTAPK ESDILASLTS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.113540.0callus| flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g079590.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145240.0S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069240.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A3Q7GAI80.0A0A3Q7GAI8_SOLLC; Uncharacterized protein
STRINGSolyc04g079590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-20B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]