PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g079570.1.1

Common Name

LOC101264214

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 240aa MW: 24387.9 Da PI: 6.8879

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g079570.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.5e-39	25	83	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rkn ++ Solyc04g079570.1.1 25 PENLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNVPVGGGTRKNSSH 83 57899**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	24	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSSEIGDRRP ARLPAPVNGT RPSEPENLPC PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR 60 YWTRGGTLRN VPVGGGTRKN SSHKRPRINS GAGTVQEQTN PITMMGSGSG HVSGSGSMSL 120 MGCEVNLNES VHEGGNGTSS FTSLLTAPVG VGVGGFVPLG GFGLGLGGFG LGNLDWPMEQ 180 VSGGGNGGDG GENDKWQLSG GEMEGGGGGG GSGGGGIGGD DDCFGWPDLA ISAPGTSLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g079570.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU914524	0.0	S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238591.1	1e-170	dof zinc finger protein DOF3.4-like
TrEMBL	A0A3Q7H2F7	1e-169	A0A3Q7H2F7_SOLLC; Uncharacterized protein
STRING	Solyc04g079570.1.1	1e-169	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	6e-34	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Solyc04g079570.1.1
Entrez Gene	101264214

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]