PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g079360.1.1
Common NameLOC101262913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 253aa    MW: 27917.9 Da    PI: 8.7018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g079360.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-193580147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Solyc04g079360.1.1 35 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 80
                        79*****************************9.***********985 PP

2Myb_DNA-binding55.81e-1789131347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Solyc04g079360.1.1  89 PFSPAEDEAILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 131
                         79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8163085IPR017930Myb domain
SuperFamilySSF466891.08E-3133128IPR009057Homeodomain-like
SMARTSM007171.1E-163483IPR001005SANT/Myb domain
PfamPF002492.4E-183580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-253688IPR009057Homeodomain-like
CDDcd001674.73E-153779No hitNo description
SMARTSM007174.1E-1686134IPR001005SANT/Myb domain
PROSITE profilePS5129421.41387136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2389135IPR009057Homeodomain-like
CDDcd001671.91E-1289132No hitNo description
PfamPF002491.2E-1489131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDFFNRCSTS SSSSESSSSE SSLSGKNPNK SERIKGPWSA EEDKILTKLV ERYGARNWSL  60
ISKYIKGRSG KSCRLRWCNQ LSPNVEHRPF SPAEDEAILA AHAKYGNRWA TIARLLPGRT  120
DNAVKNHWNS TLKRRYQQLI QQQNQNPVGF SDVKINGSGS GSGSGFGSCM EYLNVDESPK  180
VNNNNNNYAV TNNCSGEFDD PMTTLSLAPP GMSGDELPEK KTESFPAGFW DVMRGVIARE  240
VREYVASTGF PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40321351104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g079360.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8286785e-06Solanum lycopersicum mRNA for heat shock protein 70 isoform 1 (hsc70.1 gene)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238184.10.0transcription factor MYB44-like
TrEMBLA0A3Q7H2B00.0A0A3Q7H2B0_SOLLC; Uncharacterized protein
STRINGSolyc04g079360.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-56myb domain protein 77
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]