PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g079130.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 268aa    MW: 30691.3 Da    PI: 10.3865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g079130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.3e-18129215498
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          ++ps+v+   +l lp +f++++   ++++ t+tl de+g++W   +    +  ++ l++GWk+F  +++L +gD++vF+l++ ++f  +v
  Solyc04g079130.2.1 129 PMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVY--LAQ--KFGLSGGWKRFSVDHDLADGDTIVFHLIRPTKF--KV 211
                         6899****************9995..346679***************..444..488*************************97777..88 PP

                         EEE- CS
                  B3  95 kvfr 98 
                          ++r
  Solyc04g079130.2.1 212 YIIR 215
                         8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-21119216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-24119217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-26124215No hitNo description
SMARTSM010198.8E-25126217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888126217IPR003340B3 DNA binding domain
PfamPF023623.8E-16129215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVKYEDLRKQ RLEENKKRME ELNLPLLTQA LKNSTSPKTT PMKRTKPRVV GTELVAVRRS  60
PRVAKSPAPE YKEVIHYERV MIPRRLATPT KRDRLFFAYA SDEERAASIE KAEKLEASLG  120
SDYPILVRPM LPSHVSGGFW LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKFGL  180
SGGWKRFSVD HDLADGDTIV FHLIRPTKFK VYIIRVNNAS ETVSTQTSTS TSSSEEKRML  240
LPRVVCFSVS YFVEQHVFSR SKQQRRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g079130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238166.11e-174B3 domain-containing protein At5g42700
SwissprotQ9FMZ47e-67Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A3Q7GAB31e-172A0A3Q7GAB3_SOLLC; Uncharacterized protein
STRINGSolyc04g079130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.19e-68B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]