PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g078550.2.1
Common NameLOC101247012
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 352aa    MW: 38485.4 Da    PI: 10.1576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g078550.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35.1e-31279336359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh+
  Solyc04g078550.2.1 279 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAAMLIVTYEGEHNHS 336
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.7E-18227275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.6E-33265336IPR003657WRKY domain
PROSITE profilePS5081130.343272338IPR003657WRKY domain
SuperFamilySSF1182902.09E-26274336IPR003657WRKY domain
SMARTSM007744.1E-37277337IPR003657WRKY domain
PfamPF031061.0E-26279335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAVDLMTSGY RTDNFSSKME ETAVQEAATA GLQSVEKLIR LLSKSHQNQQ QQQTNFQDSS  60
SGNSSVSADY QAVADAAVNK FKKFISLLDK NRTGHARFRR GPISSLSPPL PSKPQQLQQS  120
IKNQNPQIEE IEKPQASNTK IYCPTPIQRL PPLPHNHLQL VKNGSIERKE ASTTINFASP  180
SPATSFMSSL TGETESLQQS LSSGFQITNL SQVSSAGRPP LSTSSFKRKC SSMDDTALKC  240
SSAGGSSGRC HCPKKRKSRV KRVVRVPAIS MKMADIPPDD YSWRKYGQKP IKGSPHPRGY  300
YKCSSVRGCP ARKHVERALD DAAMLIVTYE GEHNHSHSIT ETPGAHVLES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21265335271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.9310.0callus| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g078550.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9285900.0S.lycopersicum DNA sequence from clone SL_MboI-80H23 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238130.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-104WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A3Q7GA720.0A0A3Q7GA72_SOLLC; Uncharacterized protein
STRINGSolyc04g078550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-88WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]