PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g078420.1.1

Common Name

LOC101244577

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 329aa MW: 35806.8 Da PI: 9.3151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g078420.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.6e-19	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell +v+++G+++W++I++ ++ gR++k+c++rw + Solyc04g078420.1.1 14 KGPWSPEEDELLQTLVEKHGPRNWTLISKSVP-GRSGKSCRLRWCNQ 59 79****************************.*********985 PP
2	Myb_DNA-binding	54.7	2.3e-17	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Solyc04g078420.1.1 68 AFTPEEDDTIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	28.165	9	64	IPR017930	Myb domain
SuperFamily	SSF46689	2.58E-32	11	107	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-18	13	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-19	14	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-26	15	67	IPR009057	Homeodomain-like
CDD	cd00167	5.85E-17	16	58	No hit	No description
SMART	SM00717	8.2E-15	65	113	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.459	66	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	68	114	IPR009057	Homeodomain-like
CDD	cd00167	4.19E-12	68	111	No hit	No description
Pfam	PF00249	7.3E-15	68	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAAITQRKDS DRIKGPWSPE EDELLQTLVE KHGPRNWTLI SKSVPGRSGK SCRLRWCNQL 60 SPQVEHRAFT PEEDDTIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCPSMSE 120 DLSFETPQPP LKRSSSVGPC TNFSSVMNPG SPSGSDLSDS SLSGFPQSHV YRPVPRTGGI 180 FPLPPPPPVK QIEIPPSVPD PPTSLCLSLP GSGSGSIEKP TQSPKSPPLP PPPLPAVDKP 240 IPPSVPVTCP PSAFMGHLAQ SNQSYDFSAA PKSGEKQFFT PEFLSVLQDM IRKEVKSYMS 300 GFEQNGLCMQ TDAIRNAVIK RIGISKIE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	6e-40	13	114	3	104	C-Myb DNA-Binding Domain
1msf_C	6e-40	13	114	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8797	0.0	callus\| flower\| fruit\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g078420.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238123.1	0.0	transcription factor MYB44
TrEMBL	A0A3Q7GA52	0.0	A0A3Q7GA52_SOLLC; Uncharacterized protein
STRING	Solyc04g078420.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1586	24	71
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	9e-71	myb domain protein 70

Link Out ? help Back to Top
Phytozome	Solyc04g078420.1.1
Entrez Gene	101244577

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]