PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g076530.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 633aa    MW: 70270.5 Da    PI: 6.9525
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g076530.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.9e-15199234134
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +Cgt++  Tp++Rrgpdg++ LCnaCGl ++ kg
  Solyc04g076530.2.1 199 CIHCGTSSkaTPMMRRGPDGQRNLCNACGLTWANKG 234
                         99*******************************998 PP
2GATA481.8e-15527563135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  Solyc04g076530.2.1 527 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 563
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-573108IPR010399Tify domain
PROSITE profilePS5132011.69473108IPR010399Tify domain
PfamPF062001.0E-779107IPR010399Tify domain
PfamPF062031.7E-10140182IPR010402CCT domain
PROSITE profilePS5101711.32140182IPR010402CCT domain
PROSITE profilePS501149.948193239IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-10193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-11195243No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13197238IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.95E-12198237No hitNo description
PfamPF003202.2E-13199234IPR000679Zinc finger, GATA-type
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
PROSITE profilePS5132011.962389424IPR010399Tify domain
SMARTSM009791.3E-5389424IPR010399Tify domain
PfamPF062001.9E-8393422IPR010399Tify domain
PROSITE profilePS5101712.689454496IPR010402CCT domain
PfamPF062032.1E-14454495IPR010402CCT domain
SuperFamilySSF577162.52E-11520576No hitNo description
SMARTSM004017.8E-12521574IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-13526568IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.576526577IPR000679Zinc finger, GATA-type
CDDcd002022.96E-14526569No hitNo description
PfamPF003202.0E-13527563IPR000679Zinc finger, GATA-type
PROSITE patternPS003440527554IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MIPQIWLQKM NRQMQAMNVD IHFSGDGEEV PAGNEKAVGN FPVGYEGPVD SVKVTMPHQT  60
VCSASDVVAL QNRETDFDQL TISFRGKIYV FDGVTTQKVH SLFKLLGGYE YSPGTQALGL  120
LSANQKDYVD HPVHCADPKR LESLIRFYEK RKKRCYEKKI RYGIRQEVAF RMKRKNGLFA  180
RKGSNGPKQE NIPSEETRCI HCGTSSKATP MMRRGPDGQR NLCNACGLTW ANKGIMRTLY  240
KASYDNTELE LEIATKPTMK LLNVPPLIKF LHQSASDLDA LERKPYCINI SSSHPTERLY  300
IHTTDKSIMM AENPRPLQAR PFEDHAPLQS LRMVEEEEEE EEEGDEDGAY EDDGGEETMD  360
EAEDVSMKVL NHHQYGGQSQ QLCGGGVVEV SRTSELTLAF EGEVYVFPAV TPDKVQAVLL  420
LLEGCDIPTA VPTVELPFDN KVEDLPKQAN LSKRFASLVR FREKRKERCF DKKIRYSVRK  480
EVAQRMHRKN GQFASLKSSS GSSSCDSAKS SLEGDGTQHS LTIPGKCHHC GVSENCTPAM  540
RRGPDGPRTL CNACGLKWAN KGTLRDLSKA GRTISVELNE LGTPNNPVKA FAEGSLDHCA  600
DVEKNLFSSG SNLANDIPAG IISSSNNLVE KL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.256020.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g076530.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0413600.0S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238013.10.0GATA transcription factor 19-like isoform X2
TrEMBLA0A0V0I6Z51e-176A0A0V0I6Z5_SOLCH; Putative GATA transcription factor 24-like
STRINGSolyc04g076530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-55ZIM-like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]