PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g076360.2.1 | ||||||||
Common Name | LOC101255687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 572aa MW: 60773.6 Da PI: 10.4144 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.9e-08 | 203 | 249 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 r++WT Ed l+ av+++G g+W+ I +t Rt+ q+ rw + Solyc04g076360.2.1 203 RKAWTGAEDMELITAVQKYGEGNWANILKTDFkGDRTASQLSQRWAT 249 789*************************9844469999999999966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.828 | 198 | 255 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-12 | 199 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-14 | 199 | 254 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-8 | 202 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-6 | 203 | 249 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.05E-14 | 204 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MVEKRKVNKR GFVTEDDMST LLQRYTAFTM LTLLQEVGQV NGSKIDWNDL VKKTATGITS 60 AREYQMVWRH LAYRKVLLDK FDDNAQPMDD DSDLEYELES FPPVSSEAST EAAAWGKVFI 120 ASGALRDSNM SNGNTVEASL TIQIPNGQTS GTVAANSLQG ISAFGKKLTV PVTVQTQPMP 180 SVSAAEGLDT SGPATANLPR RRRKAWTGAE DMELITAVQK YGEGNWANIL KTDFKGDRTA 240 SQLSQRWATI RKQHVMMVGN GSHLSEAQLA ARHAVSMAFR DNVRAACPIS PNAGTNSGSG 300 PSNSSHFAAA DVASAGPQPK HQQDLVPSKP IIPKIPLPKP AINPDLMVKT AAMAASSRVA 360 THSGTAASLQ KAALSKKGVH IMPGGTPAVK SSVPGSFNGL PSNVHFMRTG LVSRPAGPSN 420 APQSGTQQLH APRTQQLQAP RSVSPAVQPK PTTVPSRTNA SSGVRSAPSS YPTTVLDVKS 480 KAAVSQENQI AVLSNTRGEK TQVIQAASLA NTPQQQVPKD QNFGDLLSGK VEGQTSVLCD 540 TVKKLGGESK ASRIWVQEKL TPSQETTSNK K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g076360.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237998.1 | 0.0 | uncharacterized protein LOC101255687 | ||||
TrEMBL | A0A3Q7G916 | 0.0 | A0A3Q7G916_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g076360.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 | Representative plant | OGRP5923 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 4e-65 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g076360.2.1 |
Entrez Gene | 101255687 |
Publications ? help Back to Top | |||
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