PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g074810.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 356aa MW: 39738.4 Da PI: 6.7034

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g074810.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	140	191	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++++k+L+ Solyc04g074810.2.1 140 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 191 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.62E-11	138	195	No hit	No description
SuperFamily	SSF47459	2.22E-16	138	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.723	139	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	140	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-12	140	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-8	145	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MFTRSRSILM ALETVIYNQE TFGYGCKEYY NNNLGNFSYN YELGLTQGEG EMSFTNLLDH 60 NNNNNREESS SSPTELMYNN NAREYNIWDP NSSLEDHHLF MEGSPAAELP AAAVRSAATS 120 GRRKRRRTRS CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII 180 GGAINFVKEL EHHLQTLEAQ KRSHPQKQEH SDNHGSSSTP PFADYFAFPQ YSTHSKSTSP 240 TAAASDVAAA GSCNSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL 300 WLTVLHLNVT TVDHMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AASSS*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MFTRSRSILM ALETVIYNQE TFGYGCKEYY NNNLGNFSYN YELGLTQGEG EMSFTNLLDH  60
NNNNNREESS SSPTELMYNN NAREYNIWDP NSSLEDHHLF MEGSPAAELP AAAVRSAATS  120
GRRKRRRTRS CKNKEELENQ RMTHIAVERN RRKQMNEYLA VIRSLMPPSY VQRGDQASII  180
GGAINFVKEL EHHLQTLEAQ KRSHPQKQEH SDNHGSSSTP PFADYFAFPQ YSTHSKSTSP  240
TAAASDVAAA GSCNSPLATE KMSALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL  300
WLTVLHLNVT TVDHMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AASSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	126	RKRRR
2	122	127	RKRRRT
3	140	151	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g074810.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237957.1	0.0	transcription factor bHLH94-like
Swissprot	Q9C7T4	1e-88	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A3Q7G8Q1	0.0	A0A3Q7G8Q1_SOLLC; Uncharacterized protein
STRING	Solyc04g074810.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1996	24	62
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-85	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc04g074810.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]