PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g074250.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 1178aa MW: 128573 Da PI: 5.1745

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g074250.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	402	424	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +C+ +F++k++L +H+ H Solyc04g074250.1.1 402 QCDKCNVTFNNKDDLLQHQLFsH 424 8******************8777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.14E-6	279	325	IPR016177	DNA-binding domain
PROSITE profile	PS50157	10.554	401	429	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0043	401	424	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	403	424	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.162	447	474	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	447	469	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	449	469	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1178 aa Download sequence Send to blast
MASVTVDSSS ATVPDGALQA ESIPTVDLRL LSQSELYSLS LCSPAAFNPC RDDDVIIPKI 60 DRSVFNESAG SRKQTYSRLR LAPAATASAS SAIRSRTPHL RNSPHPLQNP SPNNGPANSE 120 SSQIVTLLKQ LFGSGTQKNP TDLVPIRVDY SDSLSVPSHV PVPGLELANV GSIGQKRKRG 180 RPRKNENGVR VAEVKVDEVV KDIVVYQNVD DSDKEIMNKD GIPVDLAVLG ASVDPFGLEL 240 RRRTEGLGSA EELLGFLGRL NGQWGSTRKK RRIVDADDFG SMLPKSWKLL LSIKRKEGRS 300 WLHCRRYISP NGRQFGTCKE VSSYLLFLRG ERNENLPTYV NGSGTVEITN ACALTSDLRI 360 QDGGKKESSV FHNSSPAVGH GELQVLLNFG ELSEVQVGDL LQCDKCNVTF NNKDDLLQHQ 420 LFSHQRRKSR NGGQSITDGV IIRDGKFECQ FCHKTFEEKH RYNGHVGNHV KKQVKTVDGS 480 LPIKMGGGIE PVVPSGAMLR EPIMQDSVVL PRNLTENAGV ITDAGDNPAP TTKIQEDHME 540 TDNKLEAEGT SNGCHNQEGS SVSRSPISSN EKTCVDISKV IVGSNIEEPE QEGLLCSNDI 600 VDSCGVSMED GKFFPTVDES KVENGRSVDT DSTTVLCSNP SLPGGNSLIK ARQIPHTEDH 660 SGKNIDDMNG VSFLAETSKG NRYLKSSTGT PSCDKEGSTV DYVGVLSGCI GEHRPSSIMS 720 DIENKECGSL NSNDNKLIMK EDNNSIAQHL DKHVKDTAER DAVDVSACVL EELGQKKGDE 780 SSLLSPACDK NSEVESLIFN DLKTSAEEPK ISELQSVRSN IVGFTSSDNY AVKKVAASDT 840 EKEKSLAFCP LFPAMNARAS CAEDHDTKVY QSTLEGNDLQ RSANALFSTT NVPEASTKEY 900 TMHRSYNNSL KESKFDGLEH PRHHDLNVVF GNSHVDLSAN LNCTPFQLGM EETYGVQDNL 960 QKRLETDKHG EVGIDLSDSS FKGKTGDFGS NFNTVFPSQL WNEHKLNEVD NSGKKIITSF 1020 GCGDAKPNED VMAGSIWRVG VENVMQGGSA GNSTSVAQSS NCFQTYDVLS DKVPNLYGEN 1080 EKYNGNTGFD GLSSDRTGPV EYSFMSTQSS NSLQEEPRVL PYDVDIEQGF NSSFWLGKDN 1140 LMPNLAGSNQ VTMVIYMLPF CFAFLQKIHW MLECGWC*

Sequence ? help Back to Top

Protein Sequence Length: 1178 aa Download sequence Send to blast

MASVTVDSSS ATVPDGALQA ESIPTVDLRL LSQSELYSLS LCSPAAFNPC RDDDVIIPKI  60
DRSVFNESAG SRKQTYSRLR LAPAATASAS SAIRSRTPHL RNSPHPLQNP SPNNGPANSE  120
SSQIVTLLKQ LFGSGTQKNP TDLVPIRVDY SDSLSVPSHV PVPGLELANV GSIGQKRKRG  180
RPRKNENGVR VAEVKVDEVV KDIVVYQNVD DSDKEIMNKD GIPVDLAVLG ASVDPFGLEL  240
RRRTEGLGSA EELLGFLGRL NGQWGSTRKK RRIVDADDFG SMLPKSWKLL LSIKRKEGRS  300
WLHCRRYISP NGRQFGTCKE VSSYLLFLRG ERNENLPTYV NGSGTVEITN ACALTSDLRI  360
QDGGKKESSV FHNSSPAVGH GELQVLLNFG ELSEVQVGDL LQCDKCNVTF NNKDDLLQHQ  420
LFSHQRRKSR NGGQSITDGV IIRDGKFECQ FCHKTFEEKH RYNGHVGNHV KKQVKTVDGS  480
LPIKMGGGIE PVVPSGAMLR EPIMQDSVVL PRNLTENAGV ITDAGDNPAP TTKIQEDHME  540
TDNKLEAEGT SNGCHNQEGS SVSRSPISSN EKTCVDISKV IVGSNIEEPE QEGLLCSNDI  600
VDSCGVSMED GKFFPTVDES KVENGRSVDT DSTTVLCSNP SLPGGNSLIK ARQIPHTEDH  660
SGKNIDDMNG VSFLAETSKG NRYLKSSTGT PSCDKEGSTV DYVGVLSGCI GEHRPSSIMS  720
DIENKECGSL NSNDNKLIMK EDNNSIAQHL DKHVKDTAER DAVDVSACVL EELGQKKGDE  780
SSLLSPACDK NSEVESLIFN DLKTSAEEPK ISELQSVRSN IVGFTSSDNY AVKKVAASDT  840
EKEKSLAFCP LFPAMNARAS CAEDHDTKVY QSTLEGNDLQ RSANALFSTT NVPEASTKEY  900
TMHRSYNNSL KESKFDGLEH PRHHDLNVVF GNSHVDLSAN LNCTPFQLGM EETYGVQDNL  960
QKRLETDKHG EVGIDLSDSS FKGKTGDFGS NFNTVFPSQL WNEHKLNEVD NSGKKIITSF  1020
GCGDAKPNED VMAGSIWRVG VENVMQGGSA GNSTSVAQSS NCFQTYDVLS DKVPNLYGEN  1080
EKYNGNTGFD GLSSDRTGPV EYSFMSTQSS NSLQEEPRVL PYDVDIEQGF NSSFWLGKDN  1140
LMPNLAGSNQ VTMVIYMLPF CFAFLQKIHW MLECGWC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g074250.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238529.1	0.0	uncharacterized protein LOC101267888 isoform X2
TrEMBL	A0A3Q7G7E5	0.0	A0A3Q7G7E5_SOLLC; Uncharacterized protein
STRING	Solyc04g074250.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19
Representative plant	OGRP2035	7	9

Link Out ? help Back to Top
Phytozome	Solyc04g074250.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]