PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g074170.1.1
Common NameLOC101267601
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 349aa    MW: 39462.7 Da    PI: 6.9588
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g074170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lvd++ ++G g+W++ ++  g++R++k+c++rw +yl
  Solyc04g074170.1.1 14 KGPWTPEEDQILVDYIDKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++ +++++  lG++ W++Ia ++  gRt++++k++w+++l
  Solyc04g074170.1.1  67 RGKFSEEEEQTILHLHSILGNK-WSAIATHLS-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.212961IPR017930Myb domain
SuperFamilySSF466892.16E-3111108IPR009057Homeodomain-like
SMARTSM007172.6E-151363IPR001005SANT/Myb domain
PfamPF002491.7E-171461IPR001005SANT/Myb domain
CDDcd001673.22E-121661No hitNo description
PROSITE profilePS5129426.5662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2665117IPR009057Homeodomain-like
SMARTSM007177.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1567112IPR001005SANT/Myb domain
CDDcd001677.74E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQILVDYID KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLSGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DLFANLPNII ALANLLQHHP LEDHAVRLQV EAAQLAKIQY LQFLFQSSNN  180
YNPPLPTPSS NTQHYNTNNN NNNLGDLGAF NLTNFVKENS TPSLSNLENQ TLFSNENNSC  240
SQLLHNNQDK THQVPFNFQT HLNNSINEIS CHNFNFDQKN NSPSSPLNIT NILPSPHSSS  300
HLPPLAEISI SNNQGHSSSN STNNGADQGS SSYWPELFFE EHFMHDIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g074170.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9147550.0S.lycopersicum DNA sequence from clone LE_HBa-178P3 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238528.10.0transcription factor MYB93
SwissprotQ9S9Z21e-110MYB93_ARATH; Transcription factor MYB93
TrEMBLM1A7L80.0M1A7L8_SOLTU; Uncharacterized protein
STRINGSolyc04g074170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-100myb domain protein 93
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]