PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g072070.2.1 | ||||||||
Common Name | LOC101258252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 26462.8 Da PI: 7.3584 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83 | 3.1e-26 | 146 | 204 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk + + r+YY+C+s +C+vkkkver+ +d +++ +tY g+Hnhe Solyc04g072070.2.1 146 LDDGYKWRKYGKKKVKTNINLRNYYKCSSGDCKVKKKVERDGSDSRYLMTTYVGKHNHE 204 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 132 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-24 | 139 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.198 | 141 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-27 | 146 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-20 | 147 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MFGSSTSQET TNVISHQHYQ TINPNFYAFH DPLINMNQDH VHNNNYNKYQ DYDTSFLDLF 60 VDGDQEYYSN YTNNNASIYL ENPFKQQEIS SSTYSTSGNS SSASSFDATP THVHMNNENT 120 SIGIEKEKKG EKHAIAFRTK TQLETLDDGY KWRKYGKKKV KTNINLRNYY KCSSGDCKVK 180 KKVERDGSDS RYLMTTYVGK HNHESPFIIY WNEKNQANNF LNESSSSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 130 | 206 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 130 | 206 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14368 | 0.0 | callus| flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g072070.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468256 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-66O12 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237841.1 | 1e-170 | probable WRKY transcription factor 51 | ||||
TrEMBL | M1D2T0 | 1e-124 | M1D2T0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g072070.2.1 | 1e-169 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13494 | 12 | 17 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-23 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g072070.2.1 |
Entrez Gene | 101258252 |
Publications ? help Back to Top | |||
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