PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g071770.2.1 | ||||||||
Common Name | LOC101251084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 453aa MW: 49582.8 Da PI: 6.524 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.4e-20 | 209 | 258 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aaka++ a+++++g Solyc04g071770.2.1 209 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAKAYDDAALRFRG 258 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 209 | 267 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.475 | 209 | 266 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.27E-21 | 209 | 268 | No hit | No description |
Pfam | PF00847 | 1.9E-13 | 209 | 258 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-22 | 209 | 267 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-36 | 209 | 272 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 210 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 232 | 248 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MCILKVANQG DSGKYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS 60 ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD ISGVTTSFGG GGSGSIYSAN 120 SPSSSSSGSW AGQKRRRDQE ESVTGEQAQR GYGGIGEFKN GESSSSVKLE EDTSLATPQT 180 SSISTTTASQ TPPQASEVTG EETGERKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD 240 TAEAAAKAYD DAALRFRGNR AKLNFPENVR LLPQQQQQPT TRLAISTSSS TAAPRFQLMS 300 AASTRSPSPS PFFFQSYNQP PRQSDQQHQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG 360 GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS TTSPAYPLFY SAQQSRFFQP 420 QTHQNQSNSS SNSSNFPPPF WTSSGHYPPS SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 208 | 269 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14185 | 0.0 | flower |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g071770.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237817.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A3Q7G6K1 | 0.0 | A0A3Q7G6K1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g071770.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-28 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g071770.2.1 |
Entrez Gene | 101251084 |
Publications ? help Back to Top | |||
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