PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g064860.1.1
Common NameLOC101246340
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 234aa    MW: 25871.3 Da    PI: 7.9235
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g064860.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-193079149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                        k+i n+  r+vtfskRr g++KKA+EL++L++ae+a+++ s ++++l+++
  Solyc04g064860.1.1 30 KPIANQNSRHVTFSKRRLGLFKKASELCILTGAEIAIMVQSlKRQRLFTF 79
                        689************************************99567888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-242282IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.962270IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-2223111IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-102444IPR002100Transcription factor, MADS-box
PfamPF003193.2E-193279IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-104459IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNINNNTNAA ANSAAVAVKK TQGRRKIAIK PIANQNSRHV TFSKRRLGLF KKASELCILT  60
GAEIAIMVQS LKRQRLFTFG HPSADAVINR YLTGKSEEQK PAVDDQLNYV QQSNEYYSQI  120
CRELELEKKV KEEIVIDESK MVNGGSSSNN GGGGFWWNES IDEMGIEELE KFMFALEELK  180
KKVNMRCDEL SMINGSSSMA AAATASTSSM NQAIDYCASI VPFDFNYPGN AQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g064860.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682830.0S.lycopersicum DNA sequence from clone SL_MboI-14G22 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237763.11e-174agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G7871e-173A0A3Q7G787_SOLLC; Uncharacterized protein
STRINGSolyc04g064860.1.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]