PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g056360.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 402aa    MW: 45943 Da    PI: 6.3246
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g056360.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-313188260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                        dDgy+WrKYGqK+vkgsefprsYY+Ct ++C+vkkkvers+ ++++++i+Y+geHnh+k
  Solyc04g056360.2.1 31 DDGYSWRKYGQKTVKGSEFPRSYYKCTGQNCSVKKKVERSQ-NGEITKIIYNGEHNHQK 88
                        8****************************************.***************85 PP
2WRKY1079.3e-34215273159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k++er+ +d k v++tYeg+Hnhe
  Solyc04g056360.2.1 215 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPSCPVRKQIERAPDDIKSVITTYEGKHNHE 273
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.18E-242788IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-272788IPR003657WRKY domain
SMARTSM007742.5E-343088IPR003657WRKY domain
PROSITE profilePS5081123.023189IPR003657WRKY domain
PfamPF031063.3E-253187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-36200275IPR003657WRKY domain
SuperFamilySSF1182901.19E-28208275IPR003657WRKY domain
PROSITE profilePS5081136.46210275IPR003657WRKY domain
SMARTSM007747.0E-38215274IPR003657WRKY domain
PfamPF031061.1E-25216273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSGIINFTNT SKQENCHRAM NPNISNSIGP DDGYSWRKYG QKTVKGSEFP RSYYKCTGQN  60
CSVKKKVERS QNGEITKIIY NGEHNHQKSQ PIRRAITSSK SYDLPEEKNG GSNMQFEDNK  120
NVSALSLILN HANINMNLFE TTRESCSPLV SCEDEDEDED EDEVRAIEGI ISVDDNEFEQ  180
RRRRDYCYPA EMNLSSRTTK EPRVIVQIES EIDILDDGYR WRKYGQKVVK GNPNPRSYYK  240
CTSPSCPVRK QIERAPDDIK SVITTYEGKH NHEVPSINKT NGATVGNQTS PLISNDKSSI  300
LPFSESHKIS NIETQVQDFN FQLERKPFGY TRPNFVENQL SNLRCGPLYD LRLPSNLLSY  360
NSFLFNSTQT SNSLPFNLQM PDFSLPNRIP PPDEFHFNDL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3331276878Probable WRKY transcription factor 4
2lex_A2e-3331276878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g056360.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069114.10.0probable WRKY transcription factor 3
SwissprotQ6VWJ63e-76WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A3Q7G2M40.0A0A3Q7G2M4_SOLLC; Uncharacterized protein
STRINGSolyc04g056360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-73WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]