PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc04g056320.1.1 | ||||||||
Common Name | LOC101055523 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 41648.2 Da PI: 7.1774 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.9e-06 | 155 | 176 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C Cgk F+r nL+ H+r H Solyc04g056320.1.1 155 FCDFCGKGFKRDANLRMHMRAH 176 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00081 | 242 | 265 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + Solyc04g056320.1.1 242 YSCTRCNkKSFSVLADLKSHLKHC 265 99*******************977 PP | |||||||
3 | zf-C2H2 | 11.8 | 0.00074 | 273 | 289 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ Solyc04g056320.1.1 273 SCGTSFSRKDKLFGHMA 289 5**************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-6 | 151 | 177 | No hit | No description |
PROSITE profile | PS50157 | 12.092 | 154 | 181 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.6E-6 | 154 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0024 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 70 | 204 | 237 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 14 | 242 | 264 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 264 | 289 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 210 | 270 | 294 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MSFTGDLRHL PPNTIGDDPM VPLLNLSAVQ TRMDSLQKFL SDSVNSNTLL GQHQMNMVSD 60 EITSAIHQII VNGAALLSSA QLTNPPPPPP PPPRPSSSAE LKINLKSNHK RSFPEFDRRD 120 FESKVEVLDE EEEDGGDWEI IELDAVELLA EHIHFCDFCG KGFKRDANLR MHMRAHGNQY 180 KTPEALAKPE KCIDSSNSNK RRRFSCPFIG CTRNKSHNKF RPLKSAICVK NHFKRSHCPK 240 MYSCTRCNKK SFSVLADLKS HLKHCGETKW KCSCGTSFSR KDKLFGHMAL FEGHMPAVET 300 APAIENEKDV GVDINGGSGN GLMDIRTGSD NGFLDRLMLD GFESIDSYCF QDLFESSSPN 360 GLNTVPNTTG WFV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.8272 | 0.0 | callus| fruit| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc04g056320.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ261244 | 0.0 | Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI038 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001265961.1 | 0.0 | Hop-interacting protein THI038 | ||||
TrEMBL | G8Z266 | 0.0 | G8Z266_SOLLC; Hop-interacting protein THI038 | ||||
STRING | Solyc04g056320.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10000 | 21 | 26 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34370.3 | 6e-77 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc04g056320.1.1 |
Entrez Gene | 101055523 |
Publications ? help Back to Top | |||
---|---|---|---|
|