PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc04g054320.2.1 | ||||||||
Common Name | NITF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 371aa MW: 41763.5 Da PI: 5.1939 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.4 | 8.8e-10 | 85 | 121 | 4 | 39 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ Solyc04g054320.2.1 85 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121 799**************************82444444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-7 | 81 | 129 | No hit | No description |
SMART | SM00338 | 1.2E-4 | 82 | 145 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.967 | 84 | 128 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-6 | 85 | 121 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.93E-6 | 86 | 127 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 89 | 104 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.5E-30 | 173 | 247 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MNSSTYTQFV ASKRMGICDP IHQIGMWGDF KGSSFPDSLI LEVENCLENE MPIMEKRLEN 60 EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL 120 QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RQTDDLRNAL 180 NSQMGEIELR ILVEDCLNHY FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS 240 ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI 300 LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGD YFKRLRALSS 360 LWAGRLSEPA * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.3499 | 0.0 | cell culture| leaf| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc04g054320.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF387785 | 0.0 | Lycopersicon esculentum leucine-zipper transcription factor (NITF) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234614.1 | 0.0 | leucine-zipper transcription factor | ||||
Refseq | XP_010319687.1 | 0.0 | leucine-zipper transcription factor isoform X1 | ||||
Refseq | XP_025886212.1 | 0.0 | leucine-zipper transcription factor isoform X1 | ||||
Refseq | XP_025886213.1 | 0.0 | leucine-zipper transcription factor isoform X1 | ||||
Swissprot | P14232 | 0.0 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | Q94EX6 | 0.0 | Q94EX6_SOLLC; Leucine-zipper transcription factor | ||||
STRING | Solyc04g054320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA780 | 24 | 97 | Representative plant | OGRP2679 | 11 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-142 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc04g054320.2.1 |
Entrez Gene | 543697 |