PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g051360.2.1 | ||||||||
Common Name | LOC101263697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33804.1 Da PI: 7.0166 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 136 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a++ ++g Solyc04g051360.2.1 136 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEGAARAYDEAALTFRG 185 7********.**********76....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.4E-37 | 136 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 136 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.172 | 136 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 136 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-22 | 136 | 194 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 137 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-28 | 144 | 195 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MCNIVHYKVA NSNDNRSSRQ DDEGINVFNT MFQGNINREE EMSVMVSALT RVVVGNHPSE 60 NIENHHQNNT LISRGVGEKR GRDEVLLHGT NSSHMILSSG GEGSSIRTTR EATFIYTNST 120 NNSIIDESVN NQVRRRYRGV RQRPWGKWAA EIRDPYKAAR VWLGTFDTAE GAARAYDEAA 180 LTFRGSKAKL NFPENVTLLV PSSIQQPIYS SPDPAISPYR SNFIIGHTST EVEPILHTNP 240 SNFIEPIAHT SSLYRSNFIE RNHHMVQQEP YFQAGSTSGG SDFHQTTNSS NSSIYDHPSS 300 SSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 135 | 196 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10290 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g051360.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT990489 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237483.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A3Q7GWK4 | 0.0 | A0A3Q7GWK4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g051360.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 3e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g051360.2.1 |
Entrez Gene | 101263697 |
Publications ? help Back to Top | |||
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