PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g050750.1.1 | ||||||||
Common Name | LOC101260337 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17949 Da PI: 5.3838 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.5e-19 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p ng +r++lg+f t eAa+a++ a+++l+g Solyc04g050750.1.1 37 TYRGVRQRT-WGKWVAEIREP--NG-GARIWLGTFNTSVEAARAYDDAARRLYG 86 69****999.**********9..33.5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-19 | 36 | 96 | No hit | No description |
Pfam | PF00847 | 9.1E-14 | 37 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-21 | 37 | 94 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-30 | 37 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.549 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-35 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEECGKSRIE SVESKRKSRS RKGCMRGKGG PENASCTYRG VRQRTWGKWV AEIREPNGGA 60 RIWLGTFNTS VEAARAYDDA ARRLYGSDAK LNLSEQESTD VGIIEDGDGE CSVLEEASIF 120 KDGNGKYLVW DTPAPSLLGV DFHGDATTCF NWKNQTEMMY F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 38 | 93 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-16 | 38 | 93 | 6 | 62 | ATERF1 |
3gcc_A | 1e-16 | 38 | 93 | 6 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g050750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU915740 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-103J9, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237644.1 | 1e-117 | dehydration-responsive element-binding protein 2G-like | ||||
TrEMBL | A0A3Q7GW63 | 1e-116 | A0A3Q7GW63_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g050750.1.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 1e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g050750.1.1 |
Entrez Gene | 101260337 |
Publications ? help Back to Top | |||
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