PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g050210.1.1
Common NameLOC104647071
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 367aa    MW: 41608.9 Da    PI: 5.1092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g050210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-27233291259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++k+s+fpr+YY+C+++  C++kkk+e+s +d+k++ + Y++eHnh+
  Solyc04g050210.1.1 233 NDIWTWRKYGQKHIKDSPFPRNYYKCSTSkLCKAKKKIEKSPRDEKIFLVSYSDEHNHD 291
                         8*************************99879***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-26226293IPR003657WRKY domain
PROSITE profilePS5081127.978227293IPR003657WRKY domain
SuperFamilySSF1182902.09E-22228293IPR003657WRKY domain
SMARTSM007741.2E-28232292IPR003657WRKY domain
PfamPF031063.5E-21233291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEDDSWDIGA VVRSCNFNRP DNVVAPELEF ETHLNNILNS FDALLDPEMT IFNGSSETFS  60
LDFQTAHQEK PDAIVTSFDI NRVYNVVAPN LEFETYLNNI LNSFDALLAP DMTIFNGLSE  120
IFSLDFQTAH QEKLDDQITI NQSCNQQLYL DMIQQSQFIQ QSSFPPLSTI VACVPPTTTT  180
PKECIDLQQQ LDIGANIYPN LTNVMKTPLI QTTTRKNQSI RITYELLQEE LTNDIWTWRK  240
YGQKHIKDSP FPRNYYKCST SKLCKAKKKI EKSPRDEKIF LVSYSDEHNH DPPMNHKKHA  300
SCNSSYELKL PKGINIVPKT STLSASNSSS KCVRHSSDVA SSIITTMPPL EIRREKNDCC  360
DCGGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-162302931274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g050210.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072634.11e-144probable WRKY transcription factor 27
TrEMBLK4BRZ30.0K4BRZ3_SOLLC; Uncharacterized protein
STRINGSolyc04g050210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-26WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]