PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g050070.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 355aa MW: 39278.4 Da PI: 6.9097 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.3 | 1.7e-33 | 228 | 282 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLH+ Fveav++LGG+ekAtPk +l+lm+v++Lt++hvkSHLQkYR+ Solyc04g050070.1.1 228 KPRMRWTPELHKVFVEAVNKLGGNEKATPKGVLKLMNVDSLTIYHVKSHLQKYRT 282 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.168 | 225 | 285 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-31 | 226 | 284 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-19 | 226 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-25 | 228 | 282 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-10 | 230 | 281 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MNMQPALYIP RSSEAQHSSM GVSGAMPMSL PSLPKLEEKF PKLLDALHVI SEKELTTNLN 60 SPRAISSMSK SGTVGHLLSS TFGLHKDFHF SPTSSQETWT LYFPFISSGA SMSASQASHS 120 NVDSISLDDY PSGNKQNSWG KDSSHEFLAF PTNVPVQNGQ VESLVGVMAS DDHAKRSDWQ 180 EWADQLINDD DILGLGSSWS YIVIDVNFPD PEPKKSCPIG SPSSATSKPR MRWTPELHKV 240 FVEAVNKLGG NEKATPKGVL KLMNVDSLTI YHVKSHLQKY RTARYKPEPS EGISEKKPTI 300 ITEMPSLDLR TTTGITEALK MQMEVQNSFM NNLRYVIDLR QNKYSCTYSC FSCT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g050070.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072629.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like | ||||
TrEMBL | A0A0V0ICE0 | 0.0 | A0A0V0ICE0_SOLCH; Uncharacterized protein | ||||
STRING | Solyc04g050070.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4582 | 21 | 39 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 3e-60 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g050070.1.1 |
Publications ? help Back to Top | |||
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