PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g050000.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 22223.8 Da PI: 10.152 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 64 | 106 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T eEd +++a+++lG++ W++Iar ++ gRt++ +k++w++ Solyc04g050000.1.1 64 QPFTFEEDNTIIRAHAKLGNR-WAKIARLLP-GRTDNAIKNHWNS 106 79*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.761 | 6 | 57 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.057 | 10 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-11 | 13 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.51E-21 | 37 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.641 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 64 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-12 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 66 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEKLKKTRMI KRQWNPKEEE LLHKLVKELG AENLSLIVQL MSSQYEKSCR FHRLKQLNPQ 60 VDHQPFTFEE DNTIIRAHAK LGNRWAKIAR LLPGRTDNAI KNHWNSSLKR KHHSMLEDLT 120 LESPQPPLKK SLSIGEGQNL GIPYRSELSN FGFDRFPPFC LYLHIAPFGR ILPFSICTYN 180 NRSICIFESI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-28 | 9 | 111 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-28 | 9 | 111 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-28 | 9 | 111 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g050000.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468294 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-6D20 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010319954.1 | 1e-111 | transcription factor MYB73-like | ||||
Swissprot | O23160 | 4e-36 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A3Q7GVT1 | 1e-110 | A0A3Q7GVT1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g050000.1.1 | 1e-139 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18535 | 3 | 4 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 6e-32 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g050000.1.1 |
Publications ? help Back to Top | |||
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