PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g047870.1.1
Common NameLOC101267110
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21695.2 Da    PI: 10.6996
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g047870.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201763349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        i n +n  vtfskRr+g+ KKA EL+ LC+ae+a++ifs++gk++ +
  Solyc04g047870.1.1 17 ITNGRNLGVTFSKRRAGLYKKACELCMLCGAEIAIVIFSPEGKIFSF 63
                        889999*************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-24766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.75767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-24890IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-17929IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSRRIFKGRQ RVDMVKITNG RNLGVTFSKR RAGLYKKACE LCMLCGAEIA IVIFSPEGKI  60
FSFGHPSVET LVERFLGRNL PPPNNDVHNQ QIVAHREAGI RELNTRLMNV EGALQMEKNR  120
GESLQEIRKK ADGVWWQSPI KELNLFHLQH LKRALEILKQ KVVKEAQMVN NNAFPFQTLG  180
SAWSPPNYTS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g047870.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237686.11e-140agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G4451e-139A0A3Q7G445_SOLLC; Uncharacterized protein
STRINGSolyc04g047870.1.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-48AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]