PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g045560.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 351aa MW: 39177.9 Da PI: 8.7881 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.1 | 1.2e-38 | 68 | 143 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C+ dls+ak+yhr+h+vC++hsk+p+v++ g+++rfCqqCsrfh+ls+fDe+krsCr+rL++hn+rrrk+q Solyc04g045560.2.1 68 CQVDSCNLDLSSAKQYHRKHRVCHIHSKCPKVIILGRHRRFCQQCSRFHSLSDFDENKRSCRTRLSDHNARRRKPQ 143 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-30 | 64 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.009 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.67E-36 | 66 | 146 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-29 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MFGSGFDSPP VGVYEKNSNC TVEEGCTSSA APMMYGLGKR NNSSVELPLP SLSKKTKSST 60 HNPLKPHCQV DSCNLDLSSA KQYHRKHRVC HIHSKCPKVI ILGRHRRFCQ QCSRFHSLSD 120 FDENKRSCRT RLSDHNARRR KPQFNSTSTR FSSLFYDNKQ SMNLVFNNAP LVHSKPTADS 180 TWETSEVSKF TLTRGLTLKP YKADSFNGQS LVGGFKLSGT TEMQTNASNL YSVSNDTKAE 240 VFSQGVKETT FSLNMGVAPE LPRALSLLSN ENEFISIGHS KHVNQIIIPE QVTHAIPQSL 300 PFESSERWQA EQHLFNPHIH TLVANGHSGG SFQEIQLSKD PFDDSYMSMD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-26 | 68 | 141 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g045560.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237694.2 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A3Q7G0A9 | 0.0 | A0A3Q7G0A9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g045560.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-49 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g045560.2.1 |
Publications ? help Back to Top | |||
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