PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g045560.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 351aa    MW: 39177.9 Da    PI: 8.7881
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g045560.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.11.2e-3868143277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv++C+ dls+ak+yhr+h+vC++hsk+p+v++ g+++rfCqqCsrfh+ls+fDe+krsCr+rL++hn+rrrk+q
  Solyc04g045560.2.1  68 CQVDSCNLDLSSAKQYHRKHRVCHIHSKCPKVIILGRHRRFCQQCSRFHSLSDFDENKRSCRTRLSDHNARRRKPQ 143
                         **************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3064129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.00965142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-3666146IPR004333Transcription factor, SBP-box
PfamPF031102.4E-2968141IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MFGSGFDSPP VGVYEKNSNC TVEEGCTSSA APMMYGLGKR NNSSVELPLP SLSKKTKSST  60
HNPLKPHCQV DSCNLDLSSA KQYHRKHRVC HIHSKCPKVI ILGRHRRFCQ QCSRFHSLSD  120
FDENKRSCRT RLSDHNARRR KPQFNSTSTR FSSLFYDNKQ SMNLVFNNAP LVHSKPTADS  180
TWETSEVSKF TLTRGLTLKP YKADSFNGQS LVGGFKLSGT TEMQTNASNL YSVSNDTKAE  240
VFSQGVKETT FSLNMGVAPE LPRALSLLSN ENEFISIGHS KHVNQIIIPE QVTHAIPQSL  300
PFESSERWQA EQHLFNPHIH TLVANGHSGG SFQEIQLSKD PFDDSYMSMD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-26681411184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g045560.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237694.20.0squamosa promoter-binding-like protein 3
TrEMBLA0A3Q7G0A90.0A0A3Q7G0A9_SOLLC; Uncharacterized protein
STRINGSolyc04g045560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-49squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]