PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g015500.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 218aa MW: 24593.1 Da PI: 5.0008 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.6 | 3.1e-15 | 44 | 132 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk+ ++++++k++ +p +f++ehg + + + le ++g +W+v+l ++sg+++l +GW++F + + g f++F+++g+s+f Solyc04g015500.2.1 44 FFKIILSPHASKLH---IPDEFVTEHGAN--LGDIVLLEVPNGVVWKVRL--LNSSGMVWLNEGWNKFKEYYSIGCGYFLLFRYKGNSQF- 126 78888788877766...*********977..776888999**********..**********************************9999. PP .EEEEE- CS B3 92 lvvkvfr 98 +v +f+ Solyc04g015500.2.1 127 -CVFIFD 132 .777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 38 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-24 | 40 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.379 | 41 | 134 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.77E-20 | 42 | 132 | No hit | No description |
Pfam | PF02362 | 6.9E-13 | 44 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-13 | 44 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVDRREDHLA ETAARREKQP AGMASRQGQG EPRPVDIPER TPHFFKIILS PHASKLHIPD 60 EFVTEHGANL GDIVLLEVPN GVVWKVRLLN SSGMVWLNEG WNKFKEYYSI GCGYFLLFRY 120 KGNSQFCVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVRL EENGINLPPP GEPPKEKRIN 180 LTPPNDPPEE DVIYLPPPGI YTMEELSLIS MPSRPKV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17975 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g015500.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254134 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-27o4 map 9, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236625.1 | 1e-160 | B3 domain-containing protein At1g49475 isoform X2 | ||||
TrEMBL | A0A3Q7G0B5 | 1e-158 | A0A3Q7G0B5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g015500.2.1 | 1e-158 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 | Representative plant | OGRP1718 | 5 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g015500.2.1 |
Publications ? help Back to Top | |||
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