PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g015360.2.1
Common NameLOC101250294
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 338aa    MW: 37004.5 Da    PI: 6.6144
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g015360.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17236269134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C  tkTp+WR gp g+ktLCnaCG++y+k +
  Solyc04g015360.2.1 236 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 269
                         99******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-693326IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.49230266IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-17230280IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-15234269IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.38E-15234293No hitNo description
CDDcd002021.19E-13235282No hitNo description
PROSITE patternPS003440236261IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15236270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGSDFVDEID CSSFFDHMED LIEFSPENVC GGVDAVDCND FPSIWNDPLP DSDPFFSGSY  60
SNSASDFSAE LSVPLEDIVQ LEWLSTFVED SFSCGGLTLG KEHCSVKKES SDSKFLTSSP  120
VSVLESSSSS SSSSTSSSGP GKTLPPLSPC PRGPQRARTK RPRPTTFNPR SVNHLMFPTS  180
VSPQQFVAPG VNSLDSENFA ESPMKKKKKI KLSIPLAPIE TNQDNYQPAP QAVRKCLHCE  240
ITKTPQWRAG PMGPKTLCNA CGVRYKKGRL YPEYRPAASP TFVPSLHSNS HKKVLEMRSN  300
VFPEEETHYK QAKPRRARPL ITVQAENNTT ASTTPTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.105790.0callus| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g015360.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236632.10.0GATA transcription factor 8
TrEMBLA0A3Q7G1Q20.0A0A3Q7G1Q2_SOLLC; GATA transcription factor
STRINGSolyc04g015360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-40GATA family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]