PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g015290.2.1

Common Name

LOC101251768

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 320aa MW: 34929.2 Da PI: 6.4487

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g015290.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.4	1.4e-32	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerF++av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Solyc04g015290.2.1 42 KPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-31	39	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.891	39	99	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-23	42	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.55E-16	42	98	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-8	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-16	140	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MFPRLIQSQE DEFIHGCDVN VGIHHHNRVN GDPCLVLTSD PKPRLRWTAD LHERFIDAVT 60 QLGGPSKATP KAIMRTMGVK GLTLFHLKSH LQKYRLGKQS QKDLDEASKD GLTATYSLES 120 PCSGGTPQQL PASDLNEGFE VKEALRAQME VQSKLHLQVE AEKHLQIRQD AEQRYITMLE 180 KACKMLADQF IGDVVTENHQ ETYQGLNTKT QLSPLCNPHG LCPSESADFV GVHGPEDVSP 240 RIHPQRTDCS TESCLTSHES PAGLPVEGSS PGGKKRGLSG DSTQASYVWG EADMRSSGVH 300 VLPVNCFGIS GSNVQNVSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.22051	0.0	fruit\| leaf\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g015290.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU074307	0.0	S.lycopersicum DNA sequence from clone LE_HBa-203L19 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236637.1	0.0	protein PHR1-LIKE 3 isoform X1
TrEMBL	A0A3Q7GS42	0.0	A0A3Q7GS42_SOLLC; Uncharacterized protein
STRING	Solyc04g015290.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	3e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc04g015290.2.1
Entrez Gene	101251768

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]