PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g011630.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 171aa MW: 20017.2 Da PI: 9.5974 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 149.5 | 3.1e-46 | 3 | 167 | 209 | 374 |
GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 + +llde+v ++s+rd vL+l+++l+P+v + + +n++ F +rf eal +ys++fd+lea++pre er vE+ ++gre++nvva Solyc04g011630.1.1 3 RFRNLLDETVVVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIPERLLVEKLIFGREAMNVVA 93 677899************************************************************************************* PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ce aer+er et+++W+ r ++aGF+++pl+e++ ak ++ +++d + ++ + ++l++gWk+r ++++S W+ Solyc04g011630.1.1 94 CEAAERIERPETYKQWQVRNTRAGFRQLPLNEEILRMAKDRVKAYHKD-FVIDVDGHWLLQGWKGRIMYAASTWK 167 **********************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.795 | 1 | 148 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-43 | 3 | 167 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MYRFRNLLDE TVVVNSPRDI VLNLIRKLNP DVYIQGIVNG AYNAPFFITR FREALFHYSS 60 VFDMLEANIP REIPERLLVE KLIFGREAMN VVACEAAERI ERPETYKQWQ VRNTRAGFRQ 120 LPLNEEILRM AKDRVKAYHK DFVIDVDGHW LLQGWKGRIM YAASTWKAAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-12 | 21 | 167 | 225 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g011630.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236732.1 | 1e-119 | scarecrow-like protein 14 | ||||
Swissprot | P0C883 | 2e-75 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A3Q7G0P3 | 1e-118 | A0A3Q7G0P3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g011630.1.1 | 1e-123 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17486 | 4 | 4 | Representative plant | OGRP18124 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-77 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g011630.1.1 |
Publications ? help Back to Top | |||
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