PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g008870.2.1
Common NameLOC101245350
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 268aa    MW: 29774.3 Da    PI: 7.5619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g008870.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49e-101153444
                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        W+ e d  + +a + ++ +   +W++Ia+ ++ g+tl ++k+++
  Solyc04g008870.2.1 11 WSREQDIEFENALATYPEDcvdRWEKIAADVQ-GKTLQEVKNHY 53
                        ********************************.**********9 PP
2Myb_DNA-binding44.63.3e-14122166347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Solyc04g008870.2.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.674161IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-4758IPR009057Homeodomain-like
SMARTSM007173.6E-6759IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-11965IPR009057Homeodomain-like
PfamPF002494.0E-71153IPR001005SANT/Myb domain
CDDcd001675.37E-81157No hitNo description
PROSITE profilePS5129418.065115171IPR017930Myb domain
SuperFamilySSF466898.22E-17117172IPR009057Homeodomain-like
SMARTSM007175.0E-12119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.3E-18119169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-11120165IPR009057Homeodomain-like
PfamPF002493.6E-12122166IPR001005SANT/Myb domain
CDDcd001678.97E-11122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTVDKSRSSI WSREQDIEFE NALATYPEDC VDRWEKIAAD VQGKTLQEVK NHYEILLDDV  60
SRIESGYVPL PWYNSTFDRS LCNDVGGERI GKKSGVSGRL NSESNDGGKS TKLEQDRRKG  120
VAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRT  180
SIHDITSVNN GDVSVPRVPI TGQTIGSSGK SNKLSPTAPI APIGVGIYGA TTIGQPVTGP  240
MVNVVDQRQI QDLDIMGSSL GYYYDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1711761176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g008870.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236864.10.0transcription factor SRM1-like
SwissprotQ9FNN64e-92SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3Q7GPL80.0A0A3Q7GPL8_SOLLC; Uncharacterized protein
STRINGSolyc04g008870.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-94MYB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]