PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g008870.2.1 | ||||||||
Common Name | LOC101245350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 29774.3 Da PI: 7.5619 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9e-10 | 11 | 53 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d + +a + ++ + +W++Ia+ ++ g+tl ++k+++ Solyc04g008870.2.1 11 WSREQDIEFENALATYPEDcvdRWEKIAADVQ-GKTLQEVKNHY 53 ********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Solyc04g008870.2.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.674 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-4 | 7 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-6 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.73E-11 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-7 | 11 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.37E-8 | 11 | 57 | No hit | No description |
PROSITE profile | PS51294 | 18.065 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-17 | 117 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 119 | 169 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.3E-18 | 119 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 120 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-12 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.97E-11 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MTVDKSRSSI WSREQDIEFE NALATYPEDC VDRWEKIAAD VQGKTLQEVK NHYEILLDDV 60 SRIESGYVPL PWYNSTFDRS LCNDVGGERI GKKSGVSGRL NSESNDGGKS TKLEQDRRKG 120 VAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRT 180 SIHDITSVNN GDVSVPRVPI TGQTIGSSGK SNKLSPTAPI APIGVGIYGA TTIGQPVTGP 240 MVNVVDQRQI QDLDIMGSSL GYYYDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-17 | 11 | 76 | 11 | 76 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g008870.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236864.1 | 0.0 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 4e-92 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A3Q7GPL8 | 0.0 | A0A3Q7GPL8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g008870.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-94 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g008870.2.1 |
Entrez Gene | 101245350 |
Publications ? help Back to Top | |||
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