PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g007300.2.1
Common NameLOC101258849
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 297aa    MW: 32924.5 Da    PI: 6.4418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g007300.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08186233455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  Solyc04g007300.2.1 186 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 233
                         8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-16180250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-10180236No hitNo description
PROSITE profilePS5088815.231182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-15182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGDSSSSTPL DFHALNSTCN NNSSILMNSN MELLNSISQQ LENDQNFSSN NIHQQHGFLS  60
LSSNDQNFSN HHQHELNIMS NFHNDHHMNN ISHDVYDPAV AVAAAQFFTL GGPSYGCTSS  120
IPESESMLNS SNNNINIPTP HPLVSGNTTS KNTSEGRKRK RNNQKEVEKP REVVHVRAKR  180
GQATDSHSLA ERLRREKINE KLRCLQELVP GCYKTMGMAV MLDVIINYVR SLQNQIDFLS  240
MKLSAASLFY DFNSSEMDDM DSMQGTNGYA AAQGMGKNIV GEGYGGFPQF QTSWPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.247040.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g007300.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236997.10.0transcription factor bHLH75
TrEMBLA0A0V0HMM71e-169A0A0V0HMM7_SOLCH; Putative transcription factor bHLH75-like
STRINGSolyc04g007300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.17e-56bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]