PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g005220.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 420aa MW: 45911.5 Da PI: 4.9684

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g005220.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	244	290	12	55
HHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + s+ Ka +L + ++Y++sLq Solyc04g005220.1.1 244 RREKISERMKFLQDLVPGCNkrePVISQVTGKAVMLDEIINYVQSLQ 290 9***************76565445555789************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.004	232	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-4	238	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	244	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-6	244	294	No hit	No description
SuperFamily	SSF47459	3.14E-9	244	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MNIVSMDDAE PKDWQFSGSN LINASNRIID SFCVSVWGNP ISLSNVGLCG TNIPMNPGAA 60 TVLDWTQPNA MSKGGTFSMV PQSLTQLTAD SEKVGDMMNP FAIPNSFNTY HNGLIFGESQ 120 DVFDSPSTAI SQKKQMRNAV ESSDQDVPLP LEYEHTDRSP LKNDKNVNFV KSQGEAKECV 180 GISENESECS GHQEEVEGGY SSARCLGSRK RKRSGQDAEF DQMNGAQQQP AELAKEQNLN 240 SILRREKISE RMKFLQDLVP GCNKREPVIS QVTGKAVMLD EIINYVQSLQ RQVEMKLATI 300 NPRLDFNIDA LLAKEILHSR AGTSSSLAFA PDLTVPYQSS HQLQRGLVHS GLPGSGNSID 360 TLLKSIYPFL AVTSGGYKER SSQLPNDELH NVVEMGLCTS APLHIREGSL PSGQMKEEP*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MNIVSMDDAE PKDWQFSGSN LINASNRIID SFCVSVWGNP ISLSNVGLCG TNIPMNPGAA  60
TVLDWTQPNA MSKGGTFSMV PQSLTQLTAD SEKVGDMMNP FAIPNSFNTY HNGLIFGESQ  120
DVFDSPSTAI SQKKQMRNAV ESSDQDVPLP LEYEHTDRSP LKNDKNVNFV KSQGEAKECV  180
GISENESECS GHQEEVEGGY SSARCLGSRK RKRSGQDAEF DQMNGAQQQP AELAKEQNLN  240
SILRREKISE RMKFLQDLVP GCNKREPVIS QVTGKAVMLD EIINYVQSLQ RQVEMKLATI  300
NPRLDFNIDA LLAKEILHSR AGTSSSLAFA PDLTVPYQSS HQLQRGLVHS GLPGSGNSID  360
TLLKSIYPFL AVTSGGYKER SSQLPNDELH NVVEMGLCTS APLHIREGSL PSGQMKEEP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g005220.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027772507.1	0.0	transcription factor bHLH49-like
TrEMBL	M0ZP13	0.0	M0ZP13_SOLTU; Uncharacterized protein
STRING	Solyc04g005220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc04g005220.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]