PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g123500.2.1
Common NameLOC543910
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 387aa    MW: 42870.2 Da    PI: 4.8073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g123500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-19115164255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAaka++  +++++g
  Solyc03g123500.2.1 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAKAYDIEARRIRG 164
                         69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.56E-32115173No hitNo description
PROSITE profilePS5103223.907115172IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21115174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-31115174IPR001471AP2/ERF domain
SMARTSM003802.8E-36115178IPR001471AP2/ERF domain
PfamPF008473.7E-11116162IPR001471AP2/ERF domain
PRINTSPR003672.0E-11116127IPR001471AP2/ERF domain
PRINTSPR003672.0E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGSIISDY IDPSRTSRRL TAEFLWGRFD LGKKQKNPNN YHSKAKHLRS EVVDDFEADF  60
QDFKELSDDE DVQVDVKPFA FSASKHSTGS KSLKTVDSDK DAAADKSSKR KRKNQYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AAKAYDIEAR RIRGKKAKVN FPDEAPAPAS  180
RHTVKVNPQK VLPEESLYSL QSDSAIMNSV EDDHYDSFGF FEEKPMTKQY GYENGSSASA  240
DTGFGSFVPS AGGDIYFNSD VGSNSFECSD FGWGEPCSRT PEISSVLSAA IECNEAQFVE  300
DANSQKKLKS CTNNPVADDG NTVTMVPEEL PAFEPQMNFF HLPYMEGNWD ASGGNFLNTS  360
ATQNGGENAM DLWSFDDVPS LMGGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21115172260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.29920.0callus| cell culture| floral bud| flower| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g123500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131790.0Lycopersicon esculentum clone 134255R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234462.20.0GCC box binding protein C.4
TrEMBLA0A2K8BHC60.0A0A2K8BHC6_SOLLC; RAP2.2-2 transcription factor
STRINGSolyc03g123500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-65related to AP2 12
Publications ? help Back to Top
  1. Wang H, et al.
    Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance.
    Plant Mol. Biol., 2004. 55(2): p. 183-92
    [PMID:15604674]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]