PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g123400.1.1 | ||||||||
Common Name | LOC100037503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 60735.4 Da PI: 6.3671 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 243.5 | 8.6e-75 | 161 | 541 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPi 90 ++lL cA a++ g+++++q+lL l+elas +gd+++Rlaa+ ++AL ++l++ +s+ +++ +++ s+ n++ +l f +vsP+ Solyc03g123400.1.1 161 EHLLNPCAAAITVGNMNRVQHLLYVLHELASFTGDANHRLAAHGLRALTHHLSSPGSSSASSGtiGVTNFSSANHKFFRDSLINFIDVSPW 251 699***************************************************666665555115555555555555555555******* PP GRAS 91 lkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakf 168 +++ + +aN+ +l+ + ++ + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + +++ ++L + Solyc03g123400.1.1 252 FRIPNNIANSSVLQIIGQQdrlKNLHILDIGVSHGFQWPTLLEELTRRSgGPPPLVRLTVITPTTENgeltgtpfvIGPPGYDFSSQLLAY 342 *******************555556************************55666*********888789999888877888999******* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFler 256 A+++++++++n l l++l+ + ++ +++E+l+++ +++lh+l +++++ r+++Lk++ksl Pk +v++e++ +++ns ++F++ Solyc03g123400.1.1 343 AKAININLQINRLDNFPLQNLNSQIINSSSDETLVICAQFRLHNLN---HTIPDDRTDLLKILKSLDPKGLVLSENNteCSCNScGDFATT 430 ************8777*****************************8...8899999*******************983355555269**** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346 f++ +ey + ++ds+++ + + r + Er++++ e+ +++++ g++ +e++ekW er+++aGF ++ ++e+a + a++llrk++ + Solyc03g123400.1.1 431 FSRRVEYLWRFLDSTSVAY----KGRESEERRMMEGEAAKALTNMGEM----NERKEKWCERMRSAGFVKAVFGEDAIDGARALLRKYDsN 513 ***************9885....7777888888888899*******99....88888********************************99 PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ rvee++g++ l Wk++p+ ++S W+ Solyc03g123400.1.1 514 WEIRVEEKDGCVDLWWKGQPISFCSLWK 541 99*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.195 | 134 | 520 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-72 | 161 | 541 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MAIEEPEPNS NSDPISEWLA STLSDVPSFF HEPYSYADDL NFYADPWWVP DQEDQIVNHN 60 IIIDNTCNSF NISSPVNTAI NNIPLEPIIL DHPQPVDLSK KRKKSDQNPK ASKKNHKLQI 120 NEAAHAPTIV DQEGVQLKKS IGPKRVTTGN NSNNKEGRWA EHLLNPCAAA ITVGNMNRVQ 180 HLLYVLHELA SFTGDANHRL AAHGLRALTH HLSSPGSSSA SSGTIGVTNF SSANHKFFRD 240 SLINFIDVSP WFRIPNNIAN SSVLQIIGQQ DRLKNLHILD IGVSHGFQWP TLLEELTRRS 300 GGPPPLVRLT VITPTTENGE LTGTPFVIGP PGYDFSSQLL AYAKAININL QINRLDNFPL 360 QNLNSQIINS SSDETLVICA QFRLHNLNHT IPDDRTDLLK ILKSLDPKGL VLSENNTECS 420 CNSCGDFATT FSRRVEYLWR FLDSTSVAYK GRESEERRMM EGEAAKALTN MGEMNERKEK 480 WCERMRSAGF VKAVFGEDAI DGARALLRKY DSNWEIRVEE KDGCVDLWWK GQPISFCSLW 540 KI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-32 | 157 | 541 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-32 | 157 | 541 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-32 | 157 | 541 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 103 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.18302 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g123400.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246937 | 0.0 | Solanum lycopersicum chromosome 3 clone HBa0033F13, complete sequence | |||
GenBank | AC247003 | 0.0 | Solanum lycopersicum chromosome 3 clone HBa0033F13, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235543.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A3Q7FUJ3 | 0.0 | A0A3Q7FUJ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g123400.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 | Representative plant | OGRP4082 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-142 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g123400.1.1 |
Entrez Gene | 100037503 |
Publications ? help Back to Top | |||
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