PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g121990.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 603aa MW: 66974.3 Da PI: 6.3946 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2.1e-08 | 485 | 533 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v+++G g W+ I r Rt ++k++w+++l Solyc03g121990.2.1 485 PWTINEVVKLVEGVARYGAGKWSEIKRLAFsacPYRTSVDLKDKWRNLL 533 8****************************99**9*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.068 | 478 | 537 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-14 | 479 | 536 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.62E-16 | 480 | 538 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-6 | 482 | 535 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.32E-18 | 484 | 534 | No hit | No description |
Pfam | PF00249 | 5.8E-6 | 485 | 533 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MEASEPKFED SAVPVTSTIR ALEKEIAHPI VYQLVRSRLV PATQDEIMVV EDLLEDDKCE 60 SKLVPDTRQI SESCVTEGYP LERNSFQVTE EKSNVLVDSV PDLGKIDAPN KVAVHGLAPL 120 SELSNVDHSV RNDVCSHSQD APNEDTPSTS AAGSSWKPDF SKLEGKICLD DLPVKELQET 180 FKATFGRETS VKDKQWLKRR ITMGLTNSCD FSCTTFIIRD NVVVKKGEEQ ICHREKSRIS 240 ADSEDGVANL NSRGSFSDHD NKINDAADLS GADVSSSALE SCNVTKDLNA EQITAKRARK 300 PTKRYIEELS EIESRETSEK LASPEKIPRY QFACPETHIR PTKNVRSYAR PLVTRQDSLG 360 GSGVQIPFVS RIRRSRPREN FMPLLKLQPS GMDMATRQVR SAFDISGPQE DDKRNNDLIK 420 TSSSTGWTEQ PRIAACEKDE HSSGMKIVEL ENDVEVNDCS EDNSDDNVVT VPTQKGGMRR 480 KHHRPWTINE VVKLVEGVAR YGAGKWSEIK RLAFSACPYR TSVDLKDKWR NLLKASFVQL 540 PAEKGILNSR KQASVPIPAP ILSRVRELAD MQGQIPPVLS VCKSSGHSSS DRSVHEARSG 600 FL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2285 | 0.0 | flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g121990.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU124740 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0295I12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069816.1 | 0.0 | uncharacterized protein LOC107014425 isoform X2 | ||||
TrEMBL | A0A3Q7FXK7 | 0.0 | A0A3Q7FXK7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g121990.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11881 | 20 | 23 | Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-103 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g121990.2.1 |
Publications ? help Back to Top | |||
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