PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g121630.2.1
Common NameLOC101265907
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 742aa    MW: 85023 Da    PI: 6.6767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g121630.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.5e-2428115191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         +fY+eYAk+ GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++  +gkw+++++  eHnHel 
  Solyc03g121630.2.1  28 EFYKEYAKSEGFGTAKLSSRRSRATKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRWsSGKWYIHSIIREHNHELL 114
                         6****************************************999877....9*****************9988****************97 PP

                FAR1  91 p 91 
                         p
  Solyc03g121630.2.1 115 P 115
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2228115IPR004330FAR1 DNA binding domain
PfamPF105518.8E-21228320IPR018289MULE transposase domain
PROSITE profilePS5096610.311508544IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-7514542IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-7519546IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MESAAGLGNS NVEVRDDMEF DSHEAAYEFY KEYAKSEGFG TAKLSSRRSR ATKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRWSSGKW YIHSIIREHN HELLPAQVHF  120
FRSHRNVDPL NNDAKVRRKN MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGDAQ  180
VLLELFVHMQ EENPKFFYAI DLNEEHRLRN VFWVDAKGMD SYSNFGDVVS FDTTYFTNKY  240
KVPLVLFIGA NHHVQPTLLG CALIADDTVH TFLWLMRTWC LAMGGQGPRI LLSDQNDNIK  300
AAVGAILTNT QHYFSLWSIL EKIPSRLDYL SMWHETFMAK FRKCIYKSWT EEHFEHRWWK  360
LIEKFSLRED EWVQSLYEDR KLWVPIFMRG VSFANLSMAS RSESVNSFFD KYIQSEMSLR  420
DFIGQHKLIL EDWYEEEAKA NFDAWHETPE LLSPSPFEKQ MLLLYTHEIF RKFQVEVIGA  480
SACHLKKESE DGTSITYAVK DFEANQDFVV EWDAPKSDLY CSCHLFEYKG YLCRHAIVVL  540
QMSGVFVIPS KYILQRWTNA ATSKHSIIEG LDDAQAKVRR YNDLCRRAII LGEEGSLTQE  600
SYNIAVGAIA EALKKCQGNT LAANRKSGCS AIPAIQVDEV CQGNTLAARE LGPDSEAAQT  660
SKGSKRADPG NERESNRNTS NKKGKAPLEP EIENSAQEDF PQMDMPSSLY HPARFLTTLL  720
RGGDINKRGA ELLGEMLQEQ N*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g121630.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235595.10.0protein FAR1-RELATED SEQUENCE 4
RefseqXP_010318501.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A3Q7FW400.0A0A3Q7FW40_SOLLC; Uncharacterized protein
STRINGSolyc03g121630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]