PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g120890.2.1
Common NameLOC101258142
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 351aa    MW: 37951.8 Da    PI: 6.6926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g120890.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17239273135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Solyc03g120890.2.1 239 CLHCASDKTPQWRTGPLGPKTLCNACGVRYKSGRL 273
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-796327IPR016679Transcription factor, GATA, plant
SMARTSM004014.8E-15233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-13235270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-14235296No hitNo description
CDDcd002021.10E-13238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003203.1E-15239273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEASDLFVSG FFSHAGDEQI PNNINNNCNN FSVDDLLVIP KDDEVMADAF FNSITGNSAD  60
SSNVTVVDSC NSSVSGGDGQ FNGNLSGRSF TDAPFPNSEL CVPFDDLAEL EWLSNFVEES  120
FSSDDVQNLQ FIPVANINSS STVTTDSSSS ATTFSTGPNS PPAFPADTSV PGKARSKRSR  180
AAPCDWSSRL QLLLSPATSS SESNNISPPS VNNTTFATAK ATKAPSKKRE SVETPGRKCL  240
HCASDKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA SSPTFISARH SNSHRKVLEL  300
RRQKDLQRHQ AHHHQHQLLS QPTIFGVSNG GDEFLLHHHQ NCGPNFRHLI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.8220.0flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g120890.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235652.10.0GATA transcription factor 12
SwissprotP697814e-76GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A3Q7GKQ80.0A0A3Q7GKQ8_SOLLC; GATA transcription factor
STRINGSolyc03g120890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-68GATA transcription factor 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]