PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g119800.1.1
Common NameLOC101264812
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 341aa    MW: 37390.5 Da    PI: 5.0502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g119800.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-192475156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        +++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  Solyc03g119800.1.1 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75
                        6799******.7*********....4456*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.96E-312482No hitNo description
PfamPF008473.1E-132474IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-292582IPR001471AP2/ERF domain
SMARTSM003809.8E-362588IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-202583IPR016177DNA-binding domain
PRINTSPR003671.1E-72637IPR001471AP2/ERF domain
PRINTSPR003671.1E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKPPPPQPND GIRTRRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED  60
AARAYDQAAR TLRGANARTN FELPASDSQQ GSSIVENSEP FNFEEACRTE EPENSLVGAL  120
KAKLFNSKNS RSFIQAYASN SSSELASKVK PSVPCSEIKK TSTQSEKLPK IGHVKNCSDY  180
LFRGNHNLDY ISLMTNDYQP MISSSQCQDN QLYSGTDSAI MWLNEQGTLP WGEPQMSQVQ  240
DEVSFDTTIN INNNINTNIF GGGNSTTATC TWPVSVSEPT VDLSAFGGID VLNGSIMMPD  300
MNGLTHTSSV TTEQQFLQFE NGLWGVGDSA GWDPFLLSSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1623811271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g119800.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161747.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
TrEMBLA0A3Q7FUR30.0A0A3Q7FUR3_SOLLC; Uncharacterized protein
STRINGSolyc03g119800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-19related to AP2 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]