PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g119580.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 386aa MW: 43278.9 Da PI: 5.1318 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.3 | 2.5e-15 | 90 | 136 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 kGVr +k +g+++AeIrdps+ kr++lg+f t e A +a++a r ++ Solyc03g119580.1.1 90 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFETVEAASQAYEAKRAEF 136 59****99.**********964...3*******************999775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.818 | 89 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 90 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-8 | 90 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-17 | 91 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-18 | 91 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-14 | 91 | 135 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.8E-11 | 91 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MDGCISSVRK VRIVYDDPDA TDSESDDDQN AARFDKNVNR IKRVVKEIVI PVVSWENDFK 60 KCSKLDNIRI KDSKKIHENK KVQLKSTALP KGVRMRKWGK YAAEIRDPSQ GKRIWLGTFE 120 TVEAASQAYE AKRAEFDRII SLGKGKNLSP GPAECSMACT SHPTNGKNRV YSHPSPSSVL 180 DVPTSSAAAP VESNENLTRD MARMPDSGSE DFSLSFEDQM LHEFIKQRQG ISELIEHPLI 240 EQGSISNSVM EMTEVNIRKK TKARQPTIAS CKILTKGTED YSNDKSIFSV LNEPTIMSPI 300 HTELLHLNIE ETAVTGNSLK LLGFDDNALF DKDISQLFDP YADAICLDNT FQCCDGWNEC 360 VYCKIFKDEV DLDEVDLRWL DAVLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g119580.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236418.1 | 0.0 | uncharacterized protein LOC101265720 | ||||
TrEMBL | A0A3Q7FWB6 | 0.0 | A0A3Q7FWB6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119580.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12718 | 15 | 19 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g119580.1.1 |
Publications ? help Back to Top | |||
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