PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g118420.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1038aa MW: 112571 Da PI: 8.292 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.4 | 9.8e-06 | 325 | 343 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+ C+ Solyc03g118420.2.1 325 CGRHRCEQTCHVGPCGHCQ 343 ******************7 PP | |||||||
2 | zf-NF-X1 | 16.3 | 2.2e-05 | 389 | 406 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C +lCH+GpC+ C Solyc03g118420.2.1 389 CGNHICRELCHPGPCGDC 406 ****************99 PP | |||||||
3 | zf-NF-X1 | 21.6 | 4.7e-07 | 447 | 464 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C++ CH G+C pC Solyc03g118420.2.1 447 CGVHRCEAVCHSGDCAPC 464 ****************** PP | |||||||
4 | zf-NF-X1 | 18.7 | 3.8e-06 | 543 | 561 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC Solyc03g118420.2.1 543 CGQHSCESLCHSGHCPPCL 561 ******************6 PP | |||||||
5 | zf-NF-X1 | 18.8 | 3.5e-06 | 653 | 668 | 1 | 16 |
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG H+C ++CH+ pC+ Solyc03g118420.2.1 653 CGLHSCARTCHPSPCD 668 ***************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.91E-5 | 146 | 218 | No hit | No description |
PROSITE profile | PS50016 | 8.84 | 155 | 216 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.126 | 158 | 214 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 158 | 213 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 1.35E-5 | 247 | 308 | No hit | No description |
SMART | SM00438 | 0.023 | 270 | 288 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.7 | 272 | 287 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.68E-11 | 315 | 363 | No hit | No description |
Pfam | PF01422 | 7.1E-4 | 325 | 342 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.021 | 325 | 344 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.90E-8 | 379 | 424 | No hit | No description |
Pfam | PF01422 | 3.0E-4 | 389 | 406 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0014 | 389 | 408 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.24E-13 | 437 | 485 | No hit | No description |
Pfam | PF01422 | 2.4E-6 | 447 | 464 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 5.6E-5 | 447 | 466 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 17 | 505 | 516 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 200 | 505 | 539 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.54E-8 | 533 | 585 | No hit | No description |
Pfam | PF01422 | 9.2E-5 | 543 | 560 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.0E-4 | 543 | 562 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.34 | 600 | 618 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.6E-4 | 653 | 668 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.011 | 653 | 683 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 17 | 685 | 711 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.046 | 692 | 713 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 2.3E-4 | 933 | 978 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1038 aa Download sequence Send to blast |
MSFPAQNNRR NNNSNRPRNN NNNPVVQSGG ARREWVARGS APTNTVPFSA APVTPVTTTT 60 VVTPVFGGNG RDNENVSSAP FNRFQNQNQT YGEPKFNRGM YGNQRGRGRG SYNHQENKME 120 RPVREVSGRI NQERVKDPNL PQLVQEIEEK LLKGNIECMI CYDMVRRSAP MWSCSSCYSI 180 FHLHCTKKWA RAPTSVDTSA EKNQRFNWRC PGCQSVQLTS SRDIRYLCFC GKRQDPPSDL 240 YLTPHSCGEP CGKKLEKELP GNGLSEEDLC PHVCVLQCHP GPCPPCKAFA PARSCPCGKE 300 VITTRCSDRK SVLTCGQQCG KLLDCGRHRC EQTCHVGPCG HCQIVVDAHC FCKKKTESLL 360 CGDMGVKGDI KMEDGVFSCN SVCGKKLCCG NHICRELCHP GPCGDCALLP SKVKTCCCGK 420 TSLEEERHSC LDPIPTCSKV CGKRLRCGVH RCEAVCHSGD CAPCLVPVTQ RCRCGSTSRT 480 VECYKTQAED EQFTCDRPCG QKKNCGRHRC SERCCPLSNP KNSITGGWNP HFCSMPCEKK 540 LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPLPSC QLPCSVSQPC 600 GHPPTHSCHF GDCLPCAVPV AKECVGGHVI LRNIPCGSKD IRCNKLCGKT RQCGLHSCAR 660 TCHPSPCDVS AGPSNGSRAS CGQTCGAPRR DCRHTCTALC HPSSSCPDVR CEFPVTITCS 720 CGRITANVPC DAGGQIVDSV LEASIIHKLP SSLQPIEING KKVPLGQRKL TCDDECAKME 780 KKKVLSDAFG ITPPNLESLH FGENAAVSEV LGDLLRRDAK WVLSIEERCK FLVLGRSRGG 840 LNALKVHVFC PMLKEKRDAI RLIAARWKLS VNAAGWEPKR FIAVHVIPKS KAPSRILGPK 900 GCTVNNIVQP AVFDSLVDMD PRLVVALFDL PRDADISALV LRFGGECELV WLNDKNALAV 960 FSDPARAATA MRRLDQGSAY CGAAVVHQSG VASAVASTTN VWGVSGGAKD AGGVASALKG 1020 NPWKKAVVQD PFCLEGE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g118420.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238462 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235756.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A3Q7FSF2 | 0.0 | A0A3Q7FSF2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g118420.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 | Representative plant | OGRP3950 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g118420.2.1 |
Publications ? help Back to Top | |||
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