PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g118230.1.1

Common Name

LOC101247204

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 334aa MW: 37846.1 Da PI: 5.3856

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g118230.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.6	7.1e-23	37	128	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt+qe+l+Li++++ eer rg+ + +p+W++vs+++r++g r+p+qC+++w+n+ ++kkik++e + s+s + Solyc03g118230.1.1 37 RWTRQETLVLIQGKKIAEERAHRGRkstsvfgsdKPEPKWDSVSSYCRQHGADRGPVQCRKRWSNMISDFKKIKTWETQAYGSSESYWIIS 127 8************999999987556677777699****************************************9876666677655 PP trihelix 83 d 83 + Solyc03g118230.1.1 128 N 128 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	30	103	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	36	104	IPR009057	Homeodomain-like
Pfam	PF13837	6.1E-12	36	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSTLGSTEMN ENAATLADGQ QQKMTEEGKS KTPRHSRWTR QETLVLIQGK KIAEERAHRG 60 RKSTSVFGSD KPEPKWDSVS SYCRQHGADR GPVQCRKRWS NMISDFKKIK TWETQAYGSS 120 ESYWIISNDL RREKRLPGSF DREVYNVLDG KEFTAEAYQL ALVTITTDEK LDYGVETVEE 180 EEAEEGEEEN DNVSHTGEYT MEDDVMHPAA EEVGSSPLKE HIVIDKKAKS IPSPVPRSGT 240 AEGEQPGPDF WNSPMYKDRL KKRRLSPDGC IDSNLGYKLL KTLERNTNIL HSQLDAQMEN 300 RQREMEQQKE QTNSLIAVLN KVADAVARVA DKM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	263	DRLKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g118230.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068691.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A3Q7FSB1	0.0	A0A3Q7FSB1_SOLLC; Uncharacterized protein
STRING	Solyc03g118230.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60
Representative plant	OGRP1747	13	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-58	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc03g118230.1.1
Entrez Gene	101247204

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]