PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g118160.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LFY | ||||||||
Protein Properties | Length: 430aa MW: 47990.9 Da PI: 6.9528 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 619.4 | 6.4e-189 | 1 | 411 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap.............leaaaaaaarklreleelfkayGvryltvakiaelGftvstL 78 mdp+afsaslfkwdpr a+ +pp+rlle a +++p +++ + ++r+l +leelf+ayG+ry+t+akiaelGftv+tL Solyc03g118160.1.1 1 MDPDAFSASLFKWDPRGAM-PPPSRLLEPVAPPQPPpslppppppqplpTSSYSIRSTRELGGLEELFQAYGIRYYTAAKIAELGFTVNTL 90 9**************9887.666677666665555456666665554434444444455566***************************** PP FLO_LFY 79 vdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglg 169 +dmkdeeldd+m+sls+ifr+dllvGeryGikaa+rae rrleeee +++r ++ls+ +++ldalsqeglseepvq+++e+ ++g +g g Solyc03g118160.1.1 91 LDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAIRAEWRRLEEEE-ARRRGHILSDGGTNVLDALSQEGLSEEPVQQQHEREAAGSGGGG 180 ********************************************88.88888999999999****************97776555556666 PP FLO_LFY 170 eaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCr 260 ++e++a +++++++k+ + +++r +++e ++e+ ee+ee+ ++ g+g + +erqrehPfivtepgevargkknGLDYLf+LyeqCr Solyc03g118160.1.1 181 TWEVAAGGGGRMKQRRRKK-AGRERRGEEDE--ETEELGEEDEENMNQGGGGGGISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCR 268 9999999875555554444.23455444444..33444444455555556666667*********************************** PP FLO_LFY 261 efLlqvqkiakerGekcPtk.................vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvG 334 +fL+qvq+iakerGekcPtk vtnqvfryakkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvG Solyc03g118160.1.1 269 DFLIQVQTIAKERGEKCPTKrtsligsksnhylsynyVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVG 359 *******************9888888888888888889***************************************************** PP FLO_LFY 335 awrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386 awrqacykplvaiaarqgwdida+fnahprL+iWYvPtkLrqLCh ers+a+ Solyc03g118160.1.1 360 AWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPTKLRQLCHSERSNAA 411 *************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.9E-212 | 1 | 411 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000003 | anatomy | whole plant | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0009081 | anatomy | inflorescence branch |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MDPDAFSASL FKWDPRGAMP PPSRLLEPVA PPQPPPSLPP PPPPQPLPTS SYSIRSTREL 60 GGLEELFQAY GIRYYTAAKI AELGFTVNTL LDMKDEELDD MMNSLSQIFR WDLLVGERYG 120 IKAAIRAEWR RLEEEEARRR GHILSDGGTN VLDALSQEGL SEEPVQQQHE REAAGSGGGG 180 TWEVAAGGGG RMKQRRRKKA GRERRGEEDE ETEELGEEDE ENMNQGGGGG GISERQREHP 240 FIVTEPGEVA RGKKNGLDYL FHLYEQCRDF LIQVQTIAKE RGEKCPTKRT SLIGSKSNHY 300 LSYNYVTNQV FRYAKKAGAS YINKPKMRHY VHCYALHCLD EDASNALRRA FKERGENVGA 360 WRQACYKPLV AIAARQGWDI DAIFNAHPRL AIWYVPTKLR QLCHSERSNA AAAASSSVSG 420 GVADHLPHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-106 | 233 | 420 | 3 | 173 | PROTEIN LEAFY |
2vy2_A | 1e-106 | 233 | 420 | 3 | 173 | PROTEIN LEAFY |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in floral meristems and in indeterminate vegetative meristems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g118160.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF197934 | 0.0 | Lycopersicon esculentum FLORICAULA/LEAFY-like protein (FALSIFLORA) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069882.1 | 0.0 | protein ALF isoform X2 | ||||
Swissprot | Q40504 | 0.0 | FL1_TOBAC; Floricaula/leafy homolog 1 | ||||
TrEMBL | A0A3Q7FS98 | 0.0 | A0A3Q7FS98_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g118160.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 | Representative plant | OGRP7018 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-137 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g118160.1.1 |
Publications ? help Back to Top | |||
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